miR-Intess: cel-mir-354

cel-mir-354

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-354	0.036	no	no	0.48/0.48	21/21/1.00	nd	nd	0	0	0	0	10	15	3arm	1	nd	0.24	2	0	0	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------CCUUGUU-------------------------------	0	miR-354
		len	cloning frequencies

cel-miR-354	-------------------------------------------------------------------------------ACCTTGTTTGTTGCTGCTCCT------------------	21
celegans	CAGAGCCGACTAAGCACCTTGGTGCGGCTGCAGACGGGTATCCGGCTCGACGTTCATACATCACGACTTCTTTCCTTTTACCTTGTTTGTTGCTGCTCCTATTGGTTTTG--------
cbriggsae	------CGACTAAGTGCCTTGGTGCGGCTACAGACGGGTATCCGGCTCGATGTTCATACACCGCGAC-TCTTTCCTTTTACCTTGTTTGTTGCTGCTCCTTTTGGTTTTGATTTGTTG
cjaponica	-------------------TGGTGCGGCTTCGAACGGGTA-ACAGCTCGTCGTTCATAC---------TTCTTCCTTTTACCTTGTTTGTTGCCTCTCCT------------------
	********** * ******* * *** ****** * ******************** ***
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>	Y105E8A.16.1 Y105E8A.16 rps-20
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>	Y105E8A.16.2 Y105E8A.16 rps-20
celegans	(((((((((...........((.(((((.(((((((((((...((...((.(((..........))).))...))...)))).))))))).))))).))..)))))))))	1.000 -33.02
cbriggsae	((((.(((((((..((.(((((.(((((((((((...((.(((.(((....)))...))). .....))...))))).)))))).))))).))....)))....))))))))	0.985 -31.30
cjaponica	.((...(((..(((((((((( (.((......((....)) ......)).)))))).)))))..)))...)).	0.999 -17.60

celegans	chromosome:I:14468369:14468478:-1	Same_strand\|Exonic_non-coding\|Y105E8A.16.1\|Y105E8A.16 ## Y105E8A.16\|protein_coding\|rps-20\|rps-20 encodes a small ribosomal subunit S20 protein. [Source: WormBase] ## {SimpF: CEOP1732 1 Operon} ## {MIR: cel-mir-354}
cbriggsae	chromosome:chrI:10568230:10568340:-1	Opposite_strand\|Intronic_coding\|NM_061066 ## Same_strand\|Intronic_coding\|NM_067049 ## Same_strand\|Boundary_non-coding\|NM_017866 ## Same_strand\|Exonic_coding\|NM_170948 ## {MIR: cbr-mir-354}
cjaponica	chromosome:chrUn:65822231:65822380:-1	Same_strand\|Boundary_non-coding\|NM_208340