miR-Intess: cel-mir-355

cel-mir-355

Cloning frequencies
absolute	CE1
cel-mir-355 5arm	7
normalized	CE1
cel-mir-355 5arm	0.005

block1952 (miRBase cel-mir-355) [miRNAknown_lenNOK_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-355	0.001	no	no	0.35/0.39	18/21/0.38	0.0	0.6	7	0	1	0	16	5	5arm	1	nd	0.15	2	7	1	na	na

		reads	miRBase family seed
seed	------------------------------------UUGUUUU--------------------------------------------------------------------------------------------------------------------	7	miR-355
		len	cloning frequencies
			CE1
	-----------------------------------TTTGTTTTAGCC---------------------------------TGAGCT-------------------------------------------------------------------------	18	5
	-----------------------------------TTTGTTTTAGCC---------------------------------TGAGCTAT-----------------------------------------------------------------------	20	2
cel-miR-355	-----------------------------------TTTGTTTTAGCC---------------------------------TGAGCTATG----------------------------------------------------------------------	21	-
celegans	-----------------GTCAAGAATTGAATGG--TTTGTTTTAGCC---------------------------------TGAGCTATGAGTCATCGGAATATGCATAGCTTCTT-GCTAAAACATGCCAATCAATCTTAATTGACG------------
cbriggsae	-----------------------------------TTTGTTTTAGCC---------------------------------TGAGCTATGTGTTATT-GCATATTCATAGCTACTT-GCTAAAACATA--------------------------------
cjaponica	-----------------------------------TTTGTTTTAGCC---------------------------------TGAGCTATGGAAAATT-ATAGCCGCATAGCTTCTT-GCTAAAACAAA--------------------------------
cbrenneri	-------CTTATTCTAAGTCATCAAAAGGGAATGGTTTGTTTTAGCC---------------------------------TGAGCTATGTGTTATT-GCACATACATAGCTACTT-GTTAAAACATACCAATCCAATGAACTGACTGCTATTTGGTAAG
ppacificus	GAATCGCACTAACGAAGAGAAACAACCACCTGGAATTTGTTTTTGCCGGCATCATTTTTGAAATAGCGTAGATGTCGACTTGAGCT-TGAGACAGCACCAGAGCCATTTCTTTTTCGTTCAAACGGATGTTC---------------------------
cremanei	-----------------------------------TTTGTTTTAGCC---------------------------------TGAGCTATGTGTTATT-GCACATACATAGCTTCTT-GTTAAAACATA--------------------------------
	****** * **** * * * ** * * ****
celegans	(((((..(((((.((( (.(((((((((. .((((((((..((....)).....))))))))... ))))))))).)))).))))).....))))).	1.000 -36.50
cbriggsae	..(((((((((. ..((((((((((.... )))....))))))).... )))))))))..	1.000 -19.60
cjaponica	.((((((((((. .((((((((....... .......))))))))... )))))))))).	0.999 -20.14
cbrenneri	((((((...((((((((....(((.((((.(((((((((. ..((((((((((.... ....)))))))))).... ))))))))).)))).)))..)))..))))).......))))))	0.939 -38.70
ppacificus	...(((....((((((((((((.......((((...(((((((.(((((((((.................)))))))......)). .)))))))..)))).....)))))))).))))....)))......	0.916 -26.33
cremanei	..(((((((((. .(((((((((((.... ....)))))))))))... )))))))))..	1.000 -21.20

celegans	chromosome:II:11833462:11833555:-1	intergenic ## {SimpF: WRM0621aH09 -1 fosmid,WRM0619dG01 -1 fosmid,WRM063dC06 -1 fosmid,WRM0639dF06 -1 fosmid,WRM0623bH09 -1 fosmid} ## {MIR: cel-mir-355}
cbriggsae	chromosome:chrII:6505527:6505660:-1	Opposite_strand\|Intronic_coding\|NM_020252 ## Same_strand\|Intronic_coding\|NM_063458 ## {MIR: cbr-mir-355}
cjaponica	chromosome:chrUn:90387966:90388099:-1	intergenic
cbrenneri	chromosome:chrUn:105734353:105734469:-1	intergenic
ppacificus	chromosome:chrUn:46891752:46891882:1	intergenic
cremanei	chromosome:chrUn:9664752:9664885:1	Opposite_strand\|Intronic_coding\|NM_066413 ## Same_strand\|Intronic_coding\|NM_062542

miR-Intess™

cel-mir-355

block1952 (miRBase cel-mir-355) [miRNAknown_lenNOK_cloningOK_randfoldOK]