C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-mir-360

cel-mir-360

block8312 (miRBase cel-mir-360) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-360	0.001	no	no	0.48/0.48	21/21/1.00	nd	nd	0	0	0	0	24	4	3arm	1	nd	0.14	2	0	0	na	na

block8312 hairpin

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------GACCGUA-------------------------------------------------	0	miR-360
		len	cloning frequencies

cel-miR-360	----------------------------------------------------------------------------------TGACCGTAATCCCGTTCACAA------------------------------------	21
celegans	--------------------TCTGTTAGGAAGC-ATCAATGTGTTGTGACCGTTGTTACGGTCAATTTGCAAATTGAAAAAATGACCGTAATCCCGTTCACAATACATTGTTCGTTTTCTCCAAAGG------------
cbriggsae	-------------------TTCCATAAAAAAGCGCCTAGGGTTTTGTGACCGTTGTTACGGTCAATTC-ATGTCTGACACAATGACCGTAATCCCGTTCACAACACCTTGTGTGGCTT---------------------
cjaponica	-------------------------------------------TTGTGACCGTTGTTACGGTCAAAAC-ATTCCTG--GAAATGACCGTAGTTTCGTTCACAA------------------------------------
cbrenneri	-------------------------------GC-ATCAAGGTTTTGTGACCGTTGTTACGGTCA-TTT-CAACATG--TAACTGACCGTAATCCCGTTCACAACACATTGTTTGT------------------------
cremanei	CCTTCTAATTTTTCGAGAAATTGTCAAAAAGGCGATCAGGGTTTTGTGACCGTTGTTACGGTCAATTT-CATTCAGAAGCTATGACCGTAATCCCGTTCACAACATCTTGTTTAGCTTGACTCATGAATTGTGTAAAGG
	********************* * ******** * *********
celegans	.((...((((((( ..(((((((((((((.((..((((((((((.(((..........))).))))))))))..)).)))))))))))))...)))))))....)).	1.000 -42.20
cbriggsae	..........((((((.((((((.((((((.((..((((((((((..(( (....))).....))))))))))..)).)))))).)))))).))).)))	0.997 -35.40
cjaponica	.(((((.((..((((((((((...( (....)) ....))))))))))..)).))))).	1.000 -20.00
cbrenneri	(( (.(((.((.((((((.((..(((((((((( .(( ((...)) .)).))))))))))..)).)))))).)).)))..)))	0.999 -26.80
cremanei	((((...((..((((.((....((((....(((...((((((.((((((.((..((((((((((.((( (.....))))...))))))))))..)).)))))).))))))....))))))))).))))..))...))))	0.940 -43.50

celegans	chromosome:X:5919112:5919217:1	intergenic ## {SimpF: WRM062cA07 1 fosmid} ## {MIR: cel-mir-360}
cbriggsae	chromosome:chrX:11095206:11095303:1	Opposite_strand\|Intronic_coding\|NM_014930 ## Same_strand\|Intronic_coding\|NM_011438 ## {MIR: cbr-mir-360}
cjaponica	chromosome:chrUn:44027951:44028096:-1	intergenic
cbrenneri	chromosome:chrUn:38391520:38391598:-1	intergenic
cremanei	chromosome:chrUn:1914811:1914948:-1	Same_strand\|Intronic_coding\|NM_170227

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