miR-Intess: cel-mir-392

cel-mir-392

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-392	0.001	no	no	0.41/0.41	22/22/1.00	nd	nd	0	0	0	0	14	2	3arm	1	nd	0.14	1	0	0	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------AUCAUCG-------------------------------------------	0	miR-392
		len	cloning frequencies

cel-miR-392	--------------------------------------------------------------------------TATCATCGATCACGTGTGATGA-----------------------------	22
celegans	--------------CTCGCAGAC-GTGTTCAGTCAGCATT---CGTGGTTGAGGATATCGAACACAAAAAAAGATATCATCGATCACGTGTGATGACAGATTTTCTGCG---------------A
cbriggsae	TGATTATTATCTTTTTAAAATCCTGCATTTATCTGACATCTCACATTATTGAGGATATAAACTAAATAAAGAAATATCATCGATCATGTGAGCTGTTAGATTATCAGATTTCTATGGATTCTTCA
cremanei	-------------------ATCC-GTGATTATCTGGCGGTTTACATGGTAGAAGATATCAGTATAAAAAATAGATATCATCGATCATGTATGCTGTCAGATTAATGGAT----------------
	* * * * * * * * * *** * *** * *********** * *** *
celegans	.(((((((. ....((.((((.(((. (((((((((.((((((.............)))))).))))))))).))).)))).))...)))))) )	1.000 -37.02
cbriggsae	.((.....((((.....((((.(((.((..((((((((.(((((((.(((((.(((((...((......))..))))).))))).))))))).)))))))).)))))))))....))))...)).	0.976 -32.10
cremanei	(((( ((....((((((((((.((((((((.((.((((((.((.......)).)))))).)).)))))))).))))))))))..))))))	1.000 -37.60

celegans	chromosome:X:13597163:13597254:1	intergenic ## {SimpF: WRM069aA04 1 fosmid,WRM0617dA01 1 fosmid,WRM0617cH07 1 fosmid,WRM0614bD06 1 fosmid,WRM0610bG08 1 fosmid} ## {MIR: cel-mir-392}
cbriggsae	chromosome:chrX:19202525:19202649:1	Same_strand\|Intronic_coding\|NM_007734 ## Opposite_strand\|Intronic_coding\|NM_001065436 ## {MIR: cbr-mir-392}
cremanei	chromosome:chrUn:96274952:96275040:1	intergenic