cel-mir-57
| absolute | CE1 |
| cel-mir-57 5arm | 25 |
| cel-mir-57 3arm | 1 |
| normalized | CE1 |
| cel-mir-57 5arm | 0.017 |
| cel-mir-57 3arm | 0.001 |
sblock13 (miRBase cel-mir-57) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-57 | 0.002 | no | no | 0.48/0.52 | 21/25/0.78 | 0.0 0.0 | 0.3 0.0 | 22 1 | 0 0 | 1 1 | 0 0 | 15 24 | 3 6 | 5arm 3arm | 1 1 | nd nd | 0.20 0.14 | 1 1 | 26 | 1 | 3 | 1 |
| reads | miRBase family seed | ||
| seed | ----------------------------------ACCCUGU--------------------------------------------------------------------------------------- | 25 | miR-57 |
| seed | ---------------------------------------------------------------------------------CGAGCUA---------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-57 | ---------------------------------TACCCTGTAGATCGAGCTGTGTG--------T--------------------------------------------------------------- | 24 | 16 |
| ---------------------------------TACCCTGTAGATCGAGCTGTGTG--------TT-------------------------------------------------------------- | 25 | 6 | |
| ---------------------------------TACCCTGTAGATCGAGCTGTGTG------------------------------------------------------------------------ | 23 | 3 | |
| --------------------------------------------------------------------------------ACGAGCTAGACTACAAGGTGC--------------------------- | 21 | 1 | |
| celegans | ------------------ATCGACATGCTCGTCTACCCTGTAGATCGAGCTGTGTG--------TTTGAAACAATCATACACGAGCTAGACTACAAGGTGCACGAACAAA---CCGAAGATTTATGAA | ||
| cbriggsae | -------------------GCTCTGAGTTCGTCTACCCTGTAGATCGAGCTGTGTG-------TTCTGAAGT-ATCATACACGAGCTAGACTACTAGGTGAACGATGGAA---TGGAGC--------- | ||
| cbrenneri | ---------------------------------TACCCTGTAGATAGAGCTGTGTG-------TTTGGAATATACCGTACACAAGCTAGACTACAAGGTG---------------------------- | ||
| cjaponica | ------GTTGATCTGCTCGATCCGAACATCGTCTACCCTGTAGATCGAGCTGTGTGTGTGCTATTTCGAAATGATAGAACACACGCTAGACTTCAGGGTGAACGAGATGGATTTGAGAGAAGGTTGGC | ||
| cremanei | CGTAAGTTTGAATATCTCATGACTGTTTTCGTCTACCCTGTAGATCGAGCTGTGTG-------TTTTGAAGTGTTCATACACAAGCTAGACTGCAAGGTGAACGACAAAA---TGAGA---------- | ||
| ************ ********** * *** **** ******** * **** | |||
| celegans | .(((...((.((((.((((.(((((.((.((((.(((( (.(((.....))).))))))))).))))))).)))).)))).)).. .)))........... | 1.000 -32.50 | |
| cbriggsae | (((((...((((((((((..((((.((.((((.(((( (..(((... .))).))))))))).))))))..))))...)))))). .))))) | 1.000 -32.20 | |
| cbrenneri | ((((.(((((....((((.(((( (.(((......))).)))))))))...))))).)))) | 1.000 -22.30 | |
| cjaponica | ((..((((.(((((((((....((((.(((((((.((.((.(((.((((((...(((((.......))))).))))))))).)))).))))))).))))..)))))).)))...))))..)) | 1.000 -51.90 | |
| cremanei | ..............((((((.....((.((((.((((.(((((.((.((((.(((( (..(((.....))).))))))))).))))))).)))).)))).)).) ))))) | 0.934 -33.80 |
| celegans | chromosome:II:7850429:7850527:-1 | intergenic ## {SimpF: WRM0621cG05 -1 fosmid,WRM0613aH06 -1 fosmid,WRM0615dA05 -1 fosmid,WRM0640aC07 -1 fosmid} ## {MIR: cel-mir-57} |
| cbriggsae | chromosome:chrII:5768348:5768436:-1 | Same_strand|Intronic_coding|NM_001011629 ## Opposite_strand|Intronic_coding|NM_001791 ## {MIR: cbr-mir-57} |
| cbrenneri | chromosome:chrUn:125704578:125704716:-1 | Same_strand|Intronic_coding|NM_001098360 ## Opposite_strand|Intronic_coding|NM_063247 |
| cjaponica | chromosome:chrUn:29105267:29105388:-1 | intergenic |
| cremanei | chromosome:chrUn:19014097:19014204:-1 | Opposite_strand|Intronic_coding|NM_001009825 |
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