cel-mir-58
| absolute | CE1 |
| cel-mir-58 5arm | 2 |
| cel-mir-58 3arm | 1698 |
| normalized | CE1 |
| cel-mir-58 5arm | 0.001 |
| cel-mir-58 3arm | 1.186 |
sblock44 (miRBase cel-mir-58) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-58 | 0.001 | no | no | 0.44/0.56 | 18/23/0.34 | 0.0 0.0 0.0 | 0.0 0.0 0.9 | 1 1 1585 | 0 0 0 | 1 1 1 | 0 0 0 | 15 38 10 | 7 -14 10 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.26 0.52 0.18 | 3 5 3 | 1700 | 1 | 2 | 2 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------GAGAUCG----------------------------- | 1659 | miR-58 |
| seed | ------------------------------------------------------------------------------AGAUCGU---------------------------- | 27 | novel |
| seed | ---------------------------------------------------------------------------------UCGUUCA------------------------- | 8 | novel |
| seed | ----------------------------------------------------------------------------UGAGAUC------------------------------ | 3 | novel |
| seed | ------------------------------------------------CUUCGUC---------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------------------------------------------------AUCGUUC-------------------------- | 1 | novel |
| seed | ------------------------GCCCUAC---------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------------TGAGATCGTTCAGTACGGC------------------ | 19 | 1094 | |
| cel-miR-58 | ----------------------------------------------------------------------------TGAGATCGTTCAGTACGGCAAT--------------- | 22 | 491 |
| ----------------------------------------------------------------------------TGAGATCGTTCAGTACGGCA----------------- | 20 | 56 | |
| -----------------------------------------------------------------------------GAGATCGTTCAGTACGGCA----------------- | 19 | 15 | |
| ----------------------------------------------------------------------------TGAGATCGTTCAGTACGGCAA---------------- | 21 | 11 | |
| -----------------------------------------------------------------------------GAGATCGTTCAGTACGGCAAT--------------- | 21 | 10 | |
| --------------------------------------------------------------------------------ATCGTTCAGTACGGCAAT--------------- | 18 | 8 | |
| ----------------------------------------------------------------------------TGAGATCGTTCAGTACGG------------------- | 18 | 6 | |
| ---------------------------------------------------------------------------ATGAGATCGTTCAGTACGGC------------------ | 20 | 3 | |
| -----------------------------------------------------------------------------GAGATCGTTCAGTACGGC------------------ | 18 | 2 | |
| -----------------------------------------------ACTTCGTCCAATA-------CCATAGGG-------------------------------------- | 21 | 1 | |
| -----------------------TGCCCTACTCTTCGCATCTC-ATC------------------------------------------------------------------ | 23 | 1 | |
| -------------------------------------------------------------------------------GATCGTTCAGTACGGCAAT--------------- | 19 | 1 | |
| ----------------------------------------------------------------------------TGAGATCGTTCAGTACGGCAATG-------------- | 23 | 1 | |
| celegans | --------GCTCGTCATATCCATTGCCCTACTCTTCGCATCTC-ATCACTTCGTCCAATA-------CCATAGGGATGAGATCGTTCAGTACGGCAATGGACTGAGCT----- | ||
| cbriggsae | CGTTTGATGCTCGCCATATCCATTGCCCTACTATTCGCATCTC-ATCACTCCAGTATATATATATATATATAAGGATGAGATCGTTCAGTACGGCAATGGAAAGAGCTAAACG | ||
| cbrenneri | --------GCTCGTCATATCCATTGCCCTACTCTTCGCATCTC-ATCACTTCGTCCGCCA-------ATATAAGGATGAGATCGTTCAGTACGGCAATGGAAAGAGC------ | ||
| ppacificus | ---------CTCTTCATTTCGAATG-------------ATCTCTATCCCTTCA--------------GAGTAAGCGAGAGATCGTGCAAAACG--------AAGAG------- | ||
| cremanei | --------GCTCGCCATATCCATTGCCCTACTATTCGCATCTC-ATCACTTCCTCCAGTA-------ATATAAGGATGAGATCGTTCAGTACGGCAATGGAAAGAGC------ | ||
| *** *** ** * ** ***** *** ** * ** * ******** ** *** *** | |||
| +++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ +++++ | Y67D8A.1.2 Y67D8A.1 Y67D8A.1 | ||
| +++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ +++++ | Y67D8A.1.1 Y67D8A.1 Y67D8A.1 | ||
| celegans | (((((.....(((((((((.((((...((.((((( (((.((..((.....) )...)).))))))))))...)))).))))))))).))))). | 1.000 -36.80 | |
| cbriggsae | ((((((..((((......(((((((((.((((...((.((((( (((.((...(((((((....))))))).))))))))))))...)))).)))))))))..)))))))))) | 1.000 -43.50 | |
| cbrenneri | ((((......(((((((((.((((...((.((((( (((.(((......... ....)))))))))))))...)))).)))))))))..)))) | 1.000 -35.42 | |
| ppacificus | ((((((.(((...((( ((((((....(((.. ....)))..)))))))))...))).) ))))) | 1.000 -18.60 | |
| cremanei | ((((......(((((((((.((((...((.((((( (((.(((......... ....)))))))))))))...)))).)))))))))..)))) | 1.000 -35.42 |
| celegans | chromosome:IV:3233250:3233341:1 | Same_strand|Intronic_coding|Y67D8A.1.2|Y67D8A.1 ## Y67D8A.1|protein_coding|Y67D8A.1|Y67D8A.1 is orthologous to the human gene PHOSPHORYLASE KINASE, BETA SUBUNIT (PHKB. OMIM:172490), which when mutated leads to glycogen storage disease. [Source: WormBase] ## {SimpF: CEOP4076 1 Operon,oe = 1.19 0 CpG} ## {MIR: cel-mir-58} |
| cbriggsae | chromosome:chrIV:7676279:7676390:-1 | Same_strand|Intronic_coding|NM_007735 ## Opposite_strand|Intronic_coding|NM_033150 ## {MIR: cbr-mir-58} |
| cbrenneri | chromosome:chrUn:166102206:166102296:1 | intergenic |
| ppacificus | chromosome:chrUn:170993603:170993734:-1 | intergenic |
| cremanei | chromosome:chrUn:147063288:147063378:1 | Same_strand|Intronic_coding|NM_126152 |
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