miR-Intess: cel-mir-59

cel-mir-59

Cloning frequencies
absolute	CE1
cel-mir-59 3arm	27
normalized	CE1
cel-mir-59 3arm	0.019

block4579 (miRBase cel-mir-59) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-59	0.001	no	no	0.36/0.40	20/23/1.00	0.0	1.4	26	0	1	0	15	6	3arm	1	nd	0.13	2	27	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------CGAAUCG-------------------------------------------------	27	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------------------TCGAATCGTTTATCAGGATG-------------------------------------	20	14
cel-miR-59	----------------------------------------------------------------------------------------TCGAATCGTTTATCAGGATGATG----------------------------------	23	12
	----------------------------------------------------------------------------------------TCGAATCGTTTATCAGGATGAT-----------------------------------	22	1
celegans	--------------------AGTTGATCTAGATATGACATCGTCCTGAAAACGAAACGGAACAAA---AGTTCAAGATATTGAT---TTCGAATCGTTTATCAGGATGATGTGATTAAAATCAACT-------------------
cbriggsae	-----CGTGTGTT------CGAATATTCGAATTTTGA----ATTCCAGAGGCGTGGTGGA----------------------------TCGAATCGGTAATCAACATATG-----------------------------------
cjaponica	-------TAGGTT------CGGTTCATCCGATAATGAC---GTTCTGAAATCGACGCGAAATTGG--AATTGAAAATTTGAGAT---TTCGAATCGTTTATCAGGATGTCATCATTCATTGAGCCCCTG----------------
cbrenneri	-GATTCTTCTGTTATTTTTTTTTTGAATCAAATATGACAACGTCCTGAAAACGAAACGAAACTGATTCATTGTAAAG---AGAT---TTCGAATCGTTTATCAGGATGTTGCCATTGGATTCAAATGAAAAGGTGAGACTGATC-
ppacificus	CGGTCATTACGGT------GGTCAGCGCCGAC--TTACTGCGTTTAGCAAACAAATAGCGCC-----CCTGTCAAAATTTCGACAGACTCGAATCGCTTGCTAA-ATACAGAAAGTTCGTGCGAGCCGCTCCCATCTTATGAGCG
cremanei	--GTTATTCTGTT------CCCTTGATTCATAGATGACATCGTCCTGAAAACGAAGCGAAACTAA--CATCAGAAGATA-AGAT---TTCGAATCGTTTATCAGGATGATGTCATTATTGAAACATTCATTTTTGGTAAT-----
	* * * * * * ******** * * **
celegans	(((((((......((.((((((((((((((((((..(((((.... ...((((....))))) ))))..)))))).)))))))))))).))....)))))))	1.000 -35.71
cbriggsae	(((((((( .((.((.((((..((((( ..((((.........)))) ))))))))))).))))))))))	0.972 -14.60
cjaponica	((((.. .((((((...(((.((((( (((((((...(((..(((((((.( (((.....))))..))) ))))..)))....)))))))))))).)))...))))))))))	0.999 -37.90
cbrenneri	((((..(((..(((((((((((((((((....(((.(((((((((((((((((..(((((((.............. )).) ))))..)))))).))))))))))).)))..)))))))).))))))))))))..))))	0.990 -44.24
ppacificus	((.((((...((( (((..((((.((( ((.(((..((((((((........((.. .(((((........)))))...))......))))))) )..))).))))).))))..))))))........)))).))	0.973 -43.94
cremanei	((((((..... ....((.((((..((((((((((((((((((((((..(((((((.. .(((....))). )).) ))))..)))))).))))))))))))))))..)))).)).........))))))	0.919 -42.27

celegans	chromosome:IV:11309125:11309224:-1	intergenic ## {SimpF: WRM0637aE10 -1 fosmid,WRM0640dE06 -1 fosmid,WRM0616dC03 -1 fosmid,WRM065bG03 -1 fosmid,WRM068cC11 -1 fosmid} ## {MIR: cel-mir-59}
cbriggsae	chromosome:chrV:600964:601103:1	Opposite_strand\|Intronic_coding\|NM_001847 ## Same_strand\|Intronic_coding\|NM_001028815 ## Opposite_strand\|Boundary_coding\|NM_060528
cjaponica	chromosome:chrUn:22230736:22230843:-1	intergenic
cbrenneri	chromosome:chrUn:148292271:148292407:-1	intergenic
ppacificus	chromosome:chrUn:108228994:108229124:1	intergenic
cremanei	chromosome:chrUn:57015039:57015164:-1	Opposite_strand\|Intronic_coding\|NM_069625

miR-Intess™

cel-mir-59

block4579 (miRBase cel-mir-59) [miRNAknown_cloningHIGH_randfoldOK]