cel-mir-60
| absolute | CE1 |
| cel-mir-60 5arm | 1 |
| cel-mir-60 3arm | 778 |
| normalized | CE1 |
| cel-mir-60 5arm | 0.001 |
| cel-mir-60 3arm | 0.543 |
sblock12 (miRBase cel-mir-60) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-60 | 0.001 | no | no | 0.22/0.39 | 18/25/0.99 | 0.0 0.0 | 0.0 0.0 | 1 757 | 0 0 | 1 1 | 0 0 | 21 16 | 3 5 | 5arm 3arm | 1 1 | nd nd | 0.09 0.09 | 1 1 | 779 | 1 | 2 | 1 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------AUUAUGC------------------------------------- | 765 | miR-60 |
| seed | -------------------------------------------------------------------UUAUGCA------------------------------------ | 5 | novel |
| seed | ----------------------------------------------------------------------UGCACAU--------------------------------- | 5 | novel |
| seed | -----------------------------------------------------------------UAUUAUG-------------------------------------- | 2 | novel |
| seed | ----------------------ACUGGAA--------------------------------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------------------------------------UAUGCAC----------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------TATTATGCACATTTTCTAGTTC----------------------- | 22 | 757 | |
| ---------------------------------------------------------------------ATGCACATTTTCTAGTTCAA--------------------- | 20 | 5 | |
| ------------------------------------------------------------------ATTATGCACATTTTCTAGTTCA---------------------- | 22 | 4 | |
| -----------------------------------------------------------------TATTATGCACATTTTCTAGTT------------------------ | 21 | 3 | |
| ----------------------------------------------------------------ATATTATGCACATTTTCTAGTTC----------------------- | 23 | 2 | |
| -----------------------------------------------------------------TATTATGCACATTTTCTAGTTCAAG-------------------- | 25 | 2 | |
| ---------------------AACTGGAAGAGTGCCATAAAAT---C--------------------------------------------------------------- | 23 | 1 | |
| -----------------------------------------------------------------TATTATGCACATTTTCTA--------------------------- | 18 | 1 | |
| -----------------------------------------------------------------TATTATGCACATTTTCTAGT------------------------- | 20 | 1 | |
| -------------------------------------------------------------------TTATGCACATTTTCTAGTTC----------------------- | 20 | 1 | |
| -----------------------------------------------------------------TATTATGCACATTTTCTAG-------------------------- | 19 | 1 | |
| ------------------------------------------------------------------ATTATGCACATTTTCTAGTTC----------------------- | 21 | 1 | |
| cel-miR-60 | -----------------------------------------------------------------TATTATGCACATTTTCTAGTTCA---------------------- | 23 | - |
| celegans | CTCGAAAACCGCTTGTTCTTGAACTGGAAGAGTGCCATAAAAT---CATGACAA--AGTACGTGATATTATGCACATTTTCTAGTTCAAGACTTGAGAAATCG------- | ||
| cbriggsae | ----GAAACCTCTTGTTCTTGAGCTGGAAAGGTGACATAAAAT---CATGTCCA--AGCACGCGATATTATGCACATTTTCTAGTCCAAGACTTGATTAATAATGGTTTC | ||
| cjaponica | --------------------GAGCTGGAAAAGTGCTATAAAAT---CGAGT-----AATTTACGATATTATGCACATTTTCTAGTTC----------------------- | ||
| cbrenneri | --------------------GAGCTGGAAAGGTGACATAAAAT---CATGTCAG--AGAACGCGATATTATGCACATTTTCTAGTCC----------------------- | ||
| ppacificus | -------------------------GCACGCGTGGCGCAAATTTCGTAGGCCCACTACAAGGCTAAATTATGCGCAGCGGTTCGTGC----------------------- | ||
| cremanei | --------------------GAGCTAGAAAGGTGACATAAAAT---CATGTATA--ACAACGCGATATTATGCACATTTTCTAGACC----------------------- | ||
| * *** *** * * * * ******* ** * * * | |||
| celegans | ..(((......((((.(((((((((((((((((((.((((.(( ((((.... ....)))))).)))))))).)))))))))))))))..))))...))) | 1.000 -34.90 | |
| cbriggsae | ((((((((..((.((((..(((((((((((.(((((.(( (.(((... ...))).))).)))))))).))))))))..))))))..))........)))))) | 0.980 -31.80 | |
| cjaponica | (((((((((((((((.((((.(( ((((. ...)).)))).)))))))).))))))))))) | 1.000 -22.30 | |
| cbrenneri | ..((((((((((((.(((((.(( (.(((... ...))).))).)))))))).))))))))).. | 0.999 -19.10 | |
| ppacificus | ((((((((.((((((((((....((((........))))))))).))))).)))...))))) | 0.998 -22.50 | |
| cremanei | ...(((((((((((.(((((.(( (.(((... ...))).))).)))))))).))))))))... | 1.000 -18.60 |
| celegans | chromosome:II:6328653:6328750:-1 | intergenic ## {SimpF: WRM0617aE11 -1 fosmid,WRM0636aC04 -1 fosmid,WRM0632aH03 -1 fosmid,WRM069bB10 -1 fosmid,WRM0611bE09 -1 fosmid,WRM0615bE03 -1 fosmid} ## {MIR: cel-mir-60} |
| cbriggsae | chromosome:chrII:8572385:8572485:1 | Opposite_strand|Intronic_coding|NM_001047975 ## Same_strand|Intronic_coding|NM_001011629 ## {MIR: cbr-mir-60} |
| cjaponica | chromosome:chrUn:130421823:130421960:1 | intergenic |
| cbrenneri | chromosome:chrUn:49547555:49547692:-1 | Same_strand|Intronic_coding|NM_001010986 |
| ppacificus | chromosome:chrUn:148185760:148185897:-1 | Same_strand|Intronic_coding|NM_002860 |
| cremanei | chromosome:chrUn:132859235:132859372:1 | intergenic |
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