miR-Intess: cel-mir-66-as

cel-mir-66-as

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBaseAS cel-mir-66-as	0.001	no	no	0.38/0.38	21/21/1.00	0.0	0.0	2	0	1	0	14	9	5arm	1	nd	0.24	2	2	1	na	na

		reads	miRBase family seed
seed	---------------UUUGACA-----------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	--------------GTTTGACACCGTTAGGAATTT----------------------------------------------------------------------------------------	21	2
celegans	ACCACATACGCCATGTTTGACACCGTTAGGAATTTGATCGGGATCTTAACATTCATCACATCCCTAATCAGTGTCATGT-----------------------------ATGGCATTTTTGTGG
cremanei	--------------GTTTGACACCG--AAAGACTGGTTAATA----TAACA---ACTAATTGAATCAGCACT------------------------------------TTTGTGTTCAGGT--
cbrenneri	--------------GTTTGACAGCG--G----------TATG----CATGA---ACTTCTTCCATGTTCTATAACATAT-----------------------------TTGATGTCATAAC--
cjaponica	------------CAGGTTGACAAAT--GACAATTTGACAAGT----TGACA---ATTTGACAACTGACAATCGACAAGTTGACGAGTTGTCAAGTTGACAAGTGACAATTGACAATTTG----
	* ****** * * * *
celegans	.(((((...((((((..((((((.((((((.((.((((..((((......)))))))).)).))))))..))))))..) ))))).....)))))	1.000 -32.90
cremanei	.(((((((.(( ((((.((((((...( (.... ....))..))))))..)) ))))))).)))).	0.999 -11.40
cbrenneri	...(((((..( ( (((( ...(( ((.........)))).....))))) )...)))))....	0.995 -11.40
cjaponica	(((((((.(((.( (...(((((.(((.( ((((( (((((.(((((...........))))).))))))))))).))).)))))..)).))).)))))))	1.000 -32.50

celegans	chromosome:III:2173096:2173189:-1	intergenic ## {ASMIR: cel-mir-66-as}
cremanei	chromosome:chrUn:118324006:118324139:-1	intergenic
cbrenneri	chromosome:chrUn:178336571:178336704:1	intergenic
cjaponica	chromosome:chrUn:121445966:121446063:1	Opposite_strand\|Intronic_coding\|NM_001083163 ## {SimpF: trf,trf,trf,trf}