cel-mir-70
| absolute | CE1 |
| cel-mir-70 5arm | 10 |
| cel-mir-70 3arm | 983 |
| normalized | CE1 |
| cel-mir-70 5arm | 0.007 |
| cel-mir-70 3arm | 0.687 |
sblock54 (miRBase cel-mir-70) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-70 | 0.001 | no | no | 0.35/0.50 | 18/24/0.86 | 0.0 0.0 | 1.0 0.7 | 10 828 | 0 0 | 1 1 | 0 0 | 24 16 | 4 5 | 5arm 3arm | 1 1 | nd nd | 0.14 0.17 | 1 1 | 993 | 1 | 1 | 2 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------AAUACGU---------------------------------------------- | 969 | miR-70 |
| seed | -------------------------GAAA-----UAC---------------------------------------------------------------------------------------------- | 10 | novel |
| seed | -------------------------------------------------------------------------------AUACGUC--------------------------------------------- | 8 | novel |
| seed | ----------------------------------------------------------------------------------CGUCG---------------UU--------------------------- | 5 | novel |
| seed | --------------------------------------------------------------------------------UACGUCG-------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------------------TAATACGTCG---------------TTGGTGTTTCC------------------ | 21 | 520 | |
| cel-miR-70 | -----------------------------------------------------------------------------TAATACGTCG---------------TTGGTGTTTCCAT---------------- | 23 | 308 |
| -----------------------------------------------------------------------------TAATACGTCG---------------TTGGTGTTT-------------------- | 19 | 135 | |
| ------------------------CGAAA-----TACTATCGACGAAT----------------------------------------------------------------------------------- | 19 | 4 | |
| -----------------------------------------------------------------------------TAATACGTCG---------------TTGGTGTTTC------------------- | 20 | 4 | |
| ------------------------CGAAA-----TACTATCGACGAATA---------------------------------------------------------------------------------- | 20 | 4 | |
| ------------------------------------------------------------------------------AATACGTCG---------------TTGGTGTTTCCA----------------- | 21 | 3 | |
| ---------------------------------------------------------------------------------ACGTCG---------------TTGGTGTTTCCATA--------------- | 20 | 3 | |
| ------------------------------------------------------------------------------AATACGTCG---------------TTGGTGTTTCC------------------ | 20 | 3 | |
| ------------------------CGAAA-----TACTATCGACGAATAAC-------------------------------------------------------------------------------- | 22 | 2 | |
| ---------------------------------------------------------------------------------ACGTCG---------------TTGGTGTTTCCA----------------- | 18 | 2 | |
| -------------------------------------------------------------------------------ATACGTCG---------------TTGGTGTTTCC------------------ | 19 | 1 | |
| ------------------------------------------------------------------------------AATACGTCG---------------TTGGTGTTTCCATA--------------- | 23 | 1 | |
| -----------------------------------------------------------------------------TAATACGTCG---------------TTGGTGTTTCCATA--------------- | 24 | 1 | |
| -----------------------------------------------------------------------------TAATACGTCG---------------TTGGTGTT--------------------- | 18 | 1 | |
| ------------------------------------------------------------------------------AATACGTCG---------------TTGGTGTTT-------------------- | 18 | 1 | |
| celegans | TCAAAATAAAACGATGAAAACTATCGAAA-----TACTATCGACGAATAACACTTATG----------AAGAAAT-GTAATACGTCG---------------TTGGTGTTTCCATAGTTTGAATTGTTTAT | ||
| cbriggsae | -----------------------TAGGAA-----CAGCCATCATGTAAGACATTTCTAACT-------GAAAGAT-GTAATACGTGA---------------TTGGTGTTCCCA----------------- | ||
| cjaponica | --TTCAGTATATGCTCCGAATTGACGAAAACCTCTAATTTTCAACAAAAACTTGGAAAATTTCTTTTTAAATGACAGAAATACGTCCTTTTTTTGGAATTTTTTTTTGTTTTTTTGGTAAATTTTTTGAG- | ||
| cbrenneri | ------TGGCAGAATTGGAACTTCTGAAC-----CACCACTGACGAATCACATTGAAACTA-------AAGAGAT-GTAATACGTCA--------------TTTGGTGTTTCCGAAGTTTATACTGTCA-- | ||
| ppacificus | ---------------------TCATGAA------CAATCTCAATGTGATTCACTAGGTATT------------AT-GAAATACG------------------TTGTTGTATCATGC--------------- | ||
| cremanei | -AGATGAACGAGGAGAACAGCTATAGGAA-----TACCGTTGATGCATTACACTAAACATT------TGAAAGAT-GTAATACGTCA--------------TTTGGTGTTCCTATAGTTACCCGTTCAACT | ||
| * * * * * * * ****** ** *** | |||
| ++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++ +++++++ +++++++++++ ++++++++++++++++++++++++++++++++++ | T10H9.5a T10H9.5 pmp-5 | ||
| ++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++ +++++++ +++++++++++ ++++++++++++++++++++++++++++++++++ | T10H9.5b T10H9.5 pmp-5 | ||
| ++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++ +++++++ +++++++++++ ++++++++++++++++++++++++++++++++++ | T10H9.5c.1 T10H9.5 pmp-5 | ||
| ++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++ +++++++ +++++++++++ ++++++++++++++++++++++++++++++++++ | T10H9.5c.2 T10H9.5 pmp-5 | ||
| celegans | ........(((((((..(((((((.(((( (((((.(((((.((.(((.((... ...)).) )).)).))))) .))))))))).)))))))..))))))).. | 1.000 -32.30 | |
| cbriggsae | ..(((( ((.((((((((((..(((((((..... ))..))) ))..))))))) ).)))))))).. | 1.000 -23.80 | |
| cjaponica | .((((...((...(((((..((((((((.....((..(((..((((((...(((..((((((.((.....)).))))))...)))..)))))))))..))))))))))..)))))...))...)))). | 0.904 -23.30 | |
| cbrenneri | .(((((.....(((((((.(((. (((((.(((((.((.(((((....... ....))) )).)).))))) ..))))).))).)))))))...))))). | 0.998 -32.90 | |
| ppacificus | .(((((( (((...(((((((.((((......... .) ))).)))) ))))))).))))). | 0.999 -13.10 | |
| cremanei | ...((((((.((.....((((((((((( (((((.(((((.((((((((....... ....)).) ))))).))))) ..)))))))))))))))).))))))))... | 1.000 -41.10 |
| celegans | chromosome:V:6665519:6665618:-1 | Same_strand|Intronic_coding|T10H9.5c.1|T10H9.5 ## T10H9.5|protein_coding|pmp-5|Peroxisomal Membrane Protein related family member (pmp-5) [Source:RefSeq_peptide;Acc:NP_504689] ## {SimpF: WRM0636bC07 -1 fosmid,WRM0612bA02 -1 fosmid,WRM0624bD04 -1 fosmid,yk387d5 -1 RNAi,WRM0612aG09 -1 fosmid,WRM0634aE04 -1 fosmid,WRM0623cB06 -1 fosmid,WRM0639cC08 -1 fosmid,WRM061bH08 -1 fosmid,T10H9.5 -1 Expression_profile,WRM0615cB04 -1 fosmid,WRM065cH10 -1 fosmid} ## {MIR: cel-mir-70} |
| cbriggsae | chromosome:chrV:9902597:9902736:-1 | Same_strand|Intronic_coding|NM_001011629 ## Opposite_strand|Intronic_coding|NM_001011629 ## Same_strand|Boundary_coding|NM_001028960 ## {MIR: cbr-mir-70} |
| cjaponica | chromosome:chrUn:80979346:80979473:1 | Opposite_strand|Intronic_coding|NM_170793 ## {SimpF: trf} |
| cbrenneri | chromosome:chrUn:187605846:187605941:-1 | Same_strand|Intronic_coding|NM_072288 |
| ppacificus | chromosome:chrUn:157491516:157491655:1 | intergenic |
| cremanei | chromosome:chrUn:142215298:142215401:-1 | Same_strand|Intronic_coding|NM_001028960 ## Opposite_strand|Intronic_coding|NM_001101711 |
©2008 InteRNA Genomics B.V.