cel-mir-71
| absolute | CE1 |
| cel-mir-71 5arm | 1180 |
| cel-mir-71 3arm | 38 |
| normalized | CE1 |
| cel-mir-71 5arm | 0.824 |
| cel-mir-71 3arm | 0.027 |
sblock5 (miRBase cel-mir-71) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-71 | 0.004 | no | no | 0.22/0.53 | 18/24/0.81 | 0.0 0.0 | 1.5 1.2 | 1051 38 | 0 0 | 1 1 | 0 0 | 15 20 | 4 6 | 5arm 3arm | 1 1 | nd nd | 0.06 0.06 | 1 1 | 1218 | 1 | 2 | 2 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------GAAAGAC-------------------------------------------------------------------------------------------------- | 1159 | miR-71 |
| seed | --------------------------------------------------------------------------------------AUCACUA------------------------------------------------------ | 38 | novel |
| seed | -------------------------------------------AAAGACA------------------------------------------------------------------------------------------------- | 16 | novel |
| seed | -----------------------------------------UGAAAGA--------------------------------------------------------------------------------------------------- | 3 | novel |
| seed | ----------------------------------------------GACAUG--G-------------------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------TGAAAGACATG--GGTAGTGAG------------------------------------------------------------------------------------ | 20 | 471 | |
| -----------------------------------------TGAAAGACATG--GGTAGTGAGACG--------------------------------------------------------------------------------- | 23 | 372 | |
| -----------------------------------------TGAAAGACATG--GGTAGTG-------------------------------------------------------------------------------------- | 18 | 208 | |
| -----------------------------------------TGAAAGACATG--GGTAGTGAGAC---------------------------------------------------------------------------------- | 22 | 93 | |
| -------------------------------------------------------------------------------------TATCACTATTCTGTTTTTCGCC---------------------------------------- | 22 | 27 | |
| -------------------------------------------------------------------------------------TATCACTATTCTGTTTTT-------------------------------------------- | 18 | 11 | |
| -----------------------------------------TGAAAGACATG--GGTAGTGAGACGT-------------------------------------------------------------------------------- | 24 | 11 | |
| ------------------------------------------GAAAGACATG--GGTAGTGAG------------------------------------------------------------------------------------ | 19 | 5 | |
| ------------------------------------------GAAAGACATG--GGTAGTGAGA----------------------------------------------------------------------------------- | 20 | 5 | |
| ------------------------------------------GAAAGACATG--GGTAGTGAGACG--------------------------------------------------------------------------------- | 22 | 4 | |
| -------------------------------------A---TGAAAGACATG--GGTAGTGAG------------------------------------------------------------------------------------ | 21 | 3 | |
| cel-miR-71 | -----------------------------------------TGAAAGACATG--GGTAGTGA------------------------------------------------------------------------------------- | 19 | 3 |
| ------------------------------------------GAAAGACATG--GGTAGTGAGAC---------------------------------------------------------------------------------- | 21 | 2 | |
| ---------------------------------------------AGACATG--GGTAGTGAGACG--------------------------------------------------------------------------------- | 19 | 2 | |
| -----------------------------------------TGAAAGACATG--GGTAGTGAGA----------------------------------------------------------------------------------- | 21 | 1 | |
| celegans | ------------GTCTGC-----------TCTGAACGA---TGAAAGACATG--GGTAGTGAGACGTCGG-----AGCCTCGTCGTATCACTATTCTGTTTTTCGCCG--------------------TCGGGATCGTGACCTGGAA | ||
| cbriggsae | -----------------------------GCTGAACGA---TGAAAGACATG--GGTAGTGAGACGTCGG-----AGCCTCGTCGTATCACTATTCTGTTTTTCGCCG-------------------ATCAGT-------------- | ||
| cjaponica | CTTCGGATGCCAGCATAC------AGTCTGCCCGACGA---TGAAAGACATG--GGTAGTGAGACGTCGG-----AGCCTCGTCGTATCACTATTCTGTTTTTCGCCG---------TCTGGATTGTGACGCAGTTTTGGCCCTAGG | ||
| cbrenneri | ---GGGATTACTGTAGACTTTGTCGTCGCCGCTACCGT---TGAAAGACATG--GGTAGTGAGACGTCGG-----AGCCTCGTCGTATCACTATTCTGTTTTTCGCCG---------GTACCCAGGCATCGAAATTATGGTAAGCTT | ||
| ppacificus | -----GAGTCGTGTCGAC-------GACCGACGAGCGAAGGTGAAAGACCTGTTGGTAGTGAGACGATGAAATTTAATCCTTTCGTATCACTACCCAGGCTTTCGCCC---------------TTGCTTCGGTACAATGGCCTTCTC | ||
| cremanei | -----TACCCGTGTCTGTACCACCAAACACTCGAACGA---TGAAAGACATG--GGTAGTGAGACGTCGG-----AGCCTCGTCGTATCACTATTCTGTTTTTCGCCGGTCTTGTGATATACCATGTGTCAGATTTACGAAAGGTA- | ||
| ** ******** ** ************ * * * *********** * * ******* * | |||
| +++++ ++++++ +++++++++ +++++++++++ ++++++++++++++++ +++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++ | F16A11.3c F16A11.3 ppfr-1 | ||
| +++++ ++++++ +++++++++ +++++++++++ ++++++++++++++++ +++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++ | F16A11.3d F16A11.3 ppfr-1 | ||
| +++++ ++++++ +++++++++ +++++++++++ ++++++++++++++++ +++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++ | F16A11.3a F16A11.3 ppfr-1 | ||
| +++++ ++++++ +++++++++ +++++++++++ ++++++++++++++++ +++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++ | F16A11.3b F16A11.3 ppfr-1 | ||
| celegans | (((((. (((..(((. (((((((((.( ((((((((.(((.((( ....))).))).)))))))))))))))))).)) )..))).)).)))...... | 1.000 -36.30 | |
| cbriggsae | (((((.((. (((((((((.( ((((((((.(((.((( ....))).))).)))))))))))))))))).)) .))))) | 1.000 -34.80 | |
| cjaponica | (((.((..(((((.((.. .(((..((.((((. (((((((((.( ((((((((.(((.((( ....))).))).)))))))))))))))))).)) )).)).....)))...)).))))))).))) | 0.995 -47.10 | |
| cbrenneri | .((.(((((((((......(((..(((..(((((. (((((((((.( ((((((((.(((.((( ....))).))).)))))))))))))))))).)) )))....)))..)))..))))))))).)). | 0.989 -48.90 | |
| ppacificus | (((....((((.. .(((((..(((((.((((((((.((((..((((((((.((((...............)))).)))))))))))))))))))). ))))))))))....))))...))) | 0.870 -51.36 | |
| cremanei | (((((((((((((((.......(((..((.((. (((((((((.( ((((((((.(((.((( ....))).))).)))))))))))))))))).)).))..))).........))).)))))..)))...)))) | 0.824 -42.19 |
| celegans | chromosome:I:9379918:9380011:-1 | Same_strand|Intronic_coding|F16A11.3d|F16A11.3 ## F16A11.3|protein_coding|ppfr-1|F16A11.3c [Source:RefSeq_peptide;Acc:NP_001021390] ## {SimpF: WRM0632bF02 -1 fosmid,WRM062bH07 -1 fosmid,CEOP1932 1 Operon,WRM0617dD04 -1 fosmid} ## {MIR: cel-mir-71} |
| cbriggsae | chromosome:chrI:2252473:2252547:-1 | Same_strand|Intronic_coding|NM_002035 ## Opposite_strand|Intronic_coding|NM_001107428 ## {MIR: cbr-mir-71} |
| cjaponica | chromosome:chrUn:134164445:134164566:1 | Same_strand|Intronic_coding|NM_074448 |
| cbrenneri | chromosome:chrUn:140296016:140296140:1 | Same_strand|Intronic_coding|NM_001026219 |
| ppacificus | chromosome:chrUn:28889363:28889482:-1 | Same_strand|Intronic_coding|NM_001043764 ## Opposite_strand|Intronic_coding|NM_001108615 ## {Repeats: G-rich 1 77 -1 class=Low_complexity,GA-rich 1 57 -1 class=Low_complexity} |
| cremanei | chromosome:chrUn:83434582:83434712:-1 | Same_strand|Intronic_coding|NM_001026219 |
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