miR-Intess: cel-mir-76

cel-mir-76

Cloning frequencies
absolute	CE1
cel-mir-76 3arm	316
normalized	CE1
cel-mir-76 3arm	0.221

block3475 (miRBase cel-mir-76) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-76	0.001	no	no	0.39/0.43	18/23/0.99	0.0	0.0	309	0	1	0	16	10	3arm	1	nd	0.10	1	316	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------UCGUUGU-----------------------------------------------------------	313	novel
seed	----------------------------------------------------------------------------------------UGUUGAU-------------------------------------------------------	3	novel
		len	cloning frequencies
			CE1
	-----------------------------------------------------------------------------------TTCGTTGTTGATGAA----------GCCTTG------------------------------------	21	309
	---------------------------------------------------------------------------------------TTGTTGATGAA----------GCCTTGA-----------------------------------	18	3
	-----------------------------------------------------------------------------------TTCGTTGTTGATGAA----------GCCTT-------------------------------------	20	2
	-----------------------------------------------------------------------------------TTCGTTGTTGATGAA----------GCCTTGAT----------------------------------	23	2
cel-miR-76	-----------------------------------------------------------------------------------TTCGTTGTTGATGAA----------GCCTTGA-----------------------------------	22	-
celegans	ATTTCAGCT--------------CCTGTCTGGGCTTCACAATAGTCGAATACCTTAAATTTCAAA---------ATTTGGATATTCGTTGTTGATGAA----------GCCTTGATGGGGGTGAGAAAGA--------------------
cbriggsae	-----------ATCCCTCATTCGCCAATTAGGACTTCACAACATGCGAATACCACCACTTCTATG--------------GATATTCGTTGTTGATGAA----------GTCTTAATGGACGTCTGCGGGGTCCAGG--------------
cjaponica	GTTTTAAATTC------------CTAAATTAAATTTAAAAATTTCCAAAAATCGAAAAGTTCAAAAAAAATTTTAGCGAAATTTTCGTTGTTTTTCGATTTTCTGCTTGTTTTTACAGTTATTTTTGAAGTAGAAC--------------
cbrenneri	-------------GCCCTATCCATCTGTCAGGACTTCACAATAGTCGAATACCGAT------------------AGCAGGATATTCGTTGTTGATGAA----------GTCTTAATGGGTGTTTTGATGGGGT-----------------
ppacificus	-----------------CGTAGAATGATTGGATCTTAACGACTTTCGTAT----------TTAGA---------CGTGAGATACTCGTTGTCTAATCA----------TTCTATA-----------------------------------
cremanei	AGTTTGATCTACTCGCCCGTCCACCTTTTAGGACTTCACGACAATCGAATACC-----TTCCACA---------CACTGGATATTCGTTGTTGATGAA----------GTCTTAATGGGTGTCTTGAATCGGGGACCGTTTTTTTAAACT
	** * * * * ***** * * *
celegans	.((((.((( ((((((.((((((((((((((.((((((((..(((((....) )))))).)))))))))))).)))) )))).)))))))))..))))..	1.000 -41.30
cbriggsae	(((((.((..((((.(((((((((((((((((.((((((((((.........)) ).)))))))))))).)))) )))))))))).))..)).))))).....	1.000 -42.70
cjaponica	((((((..((( ..(((.(((...(((((((...(((((((((((((...(((..((((((((...))))))))..))).))))))))))).))...)))))))...))).))).))).))))))	0.948 -21.90
cbrenneri	(((((((((((((((.(((((((((((((((.((((((((... ....)).)))))))))))).)))) ))))).)))))))....))))))))	1.000 -42.10
ppacificus	.(((((((((((((((...((((((((.(((.. ....) )).)))....)))))))))))))) )))))).	0.997 -24.80
cremanei	(((((((...((((.(((((((((((.(((((((((((((((((.((((((.. .((((.. ...)))))))))))))))).)))) ))))))).)))))....))..))))))..))....)))))))	0.994 -46.50

celegans	chromosome:III:3142035:3142131:1	intergenic ## {MIR: cel-mir-76}
cbriggsae	chromosome:chrIII_random:852345:852445:1	intergenic
cjaponica	chromosome:chrUn:125242034:125242157:1	intergenic
cbrenneri	chromosome:chrUn:44284723:44284814:-1	intergenic
ppacificus	chromosome:chrUn:173841405:173841541:1	Same_strand\|Intronic_coding\|NM_001107673 ## Opposite_strand\|Intronic_coding\|NM_001106714
cremanei	chromosome:chrUn:119622817:119622942:-1	intergenic

miR-Intess™

cel-mir-76

block3475 (miRBase cel-mir-76) [miRNAknown_cloningHIGH_randfoldOK]