C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-mir-78

cel-mir-78

Cloning frequencies
absolute	CE1
cel-mir-78 3arm	6
normalized	CE1
cel-mir-78 3arm	0.004

cel-mir-78 relative cloning frequencies

block6032 (miRBase cel-mir-78) [miRNAknown_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-78	0.593	no	no	0.55/0.57	20/21/1.00	0.0	0.0	5	0	1	0	15	5	3arm	1	nd	0.24	2	6	1	na	na

block6032 hairpin

		reads	miRBase family seed
seed	-------------------------------------------------------------GGAGGCC----------------------------	6	novel
		len	cloning frequencies
			CE1
cel-miR-78	------------------------------------------------------------TGGAGGCCTGGTTGTTTGTGC---------------	21	5
	------------------------------------------------------------TGGAGGCCTGGTTGTTTGTG----------------	20	1
celegans	aataaaatatattgtttcatagtgtccgtaaaataactagatttattttgtaaaaactatTGGAGGCCTGGTTGTTTGTGCtggaatgtttcgaga
	************************************************************************************************
celegans	..............((((..((..((((((((((((((((.(((.....((....)).....)))..)))))))))).))).)).)..))..))))	1.000 -15.00

celegans

chromosome:IV:15165608:15165703:1

intergenic ## {SimpF: WRM063cD05 1 fosmid} ## {MIR: cel-mir-78}

©2008 InteRNA Genomics B.V.