miR-Intess: cel-mir-788

cel-mir-788

Cloning frequencies
absolute	CE1
cel-mir-788 5arm	10
normalized	CE1
cel-mir-788 5arm	0.007

block7767 (miRBase cel-mir-788) [miRNAknown_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-788	0.001	no	no	0.45/0.48	21/24/1.00	0.3	0.4	9	0	1	0	9	1	5arm	1	nd	0.12	2	10	1	na	na

		reads	miRBase family seed
seed	-------------------------CCGCU---UC--------------------------------------------------------------------------------------	6	miR-788
seed	--------------------------CGCU---UCU-------------------------------------------------------------------------------------	4	novel
		len	cloning frequencies
			CE1
cel-miR-788	------------------------TCCGCT---TCTAACT--TCCATTTGCAG--------------------------------------------------------------------	24	4
	-------------------------CCGCT---TCTAACT--TCCATTTGCAG--------------------------------------------------------------------	23	3
	------------------------TCCGCT---TCTAACT--TCCATTTGC----------------------------------------------------------------------	22	2
	-------------------------CCGCT---TCTAACT--TCCATTTGC----------------------------------------------------------------------	21	1
celegans	---------------GCTCACTTTTCCGCT---TCTAACT--TCCATTTGCAGAGTTCA----AGTAATCTG-GAAAT-GGATTAGAATCGTGGAAAAGTTAGT-----------------
cbriggsae	TTCGATTAGCCTGAAACTAACTTTTCCGCT---TCTCAATGCTCCATTTGCAAAATCAAATTGATTTTCTTG-CAAATGGGATGAGAACCG--GAAACGTTTGATTGACGGAAACTTTGAA
cjaponica	--------TCCACAACCCTACTTTTCCGCT---TCTAGCT--TCCATTTGCAAAGCAGT----AAGTCTCTG-AAAAT-GGACTAGAAACGTGAAAAAGTTGGTGGA--------------
cbrenneri	------------------CACTTTACCGCT---TCTATAC--TCCATGCGCAGTGTTTG----AAAACTCTG-AGCAT-GGAATAGAGGAG--GAAAAGTG--------------------
ppacificus	------------------GACCGCTTCGATTGATCTATCCG-TCTTTCTGATAGGCTAA----AGATCATTGCGAAAT---------------GAGAGGTTTGTTCGT-------------
cremanei	-------GGCCTGAAACTTACGTCTCCGCT---TCTAACT--TCCATTTGCAGAGTTCA--TCAATTCTCTG-GAAAT-GGATTAGAACCGT-GAAATGTTAGTATGATGGTC--------
	* * * * * * * **
celegans	(((.((((((((((( (((((.. (((((((.((((..... .....)))) .)))) )))))))))..)))))))))).)))	1.000 -32.40
cbriggsae	.((((....((.......(((.((((((.( (((((....(((((((((((((((.....)))))...)) )))))))).)))))).)) )))).)))........)).....)))).	0.943 -34.36
cjaponica	(((((......((((((.(((( (((((.. (((((((......(((. ......))) .)))) )))))))))..))).))))))..)))))	0.999 -25.60
cbrenneri	((((((.((.(( (((((.. (((((((.(((.(((.. ..))).))) .)))) )))))))))).) ).))))))	1.000 -33.10
ppacificus	((((.(((((..((((((....( (((.......))))... ))))))...)))... .)).)))).......	0.973 -15.30
cremanei	((((....(((.((((.((((.( (((((.. (((((((.(((((.... ......))))) .)))) ))))))))).)). )).)))).))).....))))	1.000 -32.60

celegans	chromosome:X:8485234:8485311:-1	intergenic ## {SimpF: WRM0618bE11 -1 fosmid,WRM0634aF10 -1 fosmid,WRM0639bF01 -1 fosmid,WRM0611cG03 -1 fosmid,WRM0631aC01 -1 fosmid} ## {MIR: cel-mir-788}
cbriggsae	chromosome:chrX:16579511:16579625:-1	Opposite_strand\|Intronic_coding\|NM_004119 ## Same_strand\|Intronic_coding\|NM_064155 ## {MIR: cbr-mir-788}
cjaponica	chromosome:chrUn:39355856:39355943:1	intergenic
cbrenneri	chromosome:chrUn:95872853:95872922:1	intergenic
ppacificus	chromosome:chrUn:164896637:164896706:-1	intergenic
cremanei	chromosome:chrUn:100052245:100052340:-1	Same_strand\|Intronic_coding\|NM_170227

miR-Intess™

cel-mir-788

block7767 (miRBase cel-mir-788) [miRNAknown_cloningOK_randfoldOK]