C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-mir-792

cel-mir-792

block6401 (miRBase cel-mir-792) [miRNAknown_rep_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-792	0.001	no	DNA,RC,Satellite	0.30/0.30	23/23/1.00	nd	nd	0	0	0	0	13	6	3arm	1	nd	0.13	1	0	0	na	na

block6401 hairpin

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------UGAAAUC-------------------------------------------------------	0	novel
		len	cloning frequencies

cel-miR-792	------------------------------------------------------------------------------TTGAAATCTCTTCAACTTTCAGA----------------------------------------	23
celegans	---AAGTTGGTCAACGTTTGAGAGTTCAAAAGATTTAGC---AATTTTATACGAGTG------------------AAATTGAAATCTCTTCAACTTTCAGACGTTTTCTGATTT---------------------------
cremanei	------------GGAATTTA----TTCGAAAAAT--------GATGTCATATCGAGAAGTTTTG-----------ATTATGAAATCTTCT---------AGTGATCTCC--------------------------------
cbriggsae	TTTGAAGTGTCCAGATTTTCAAATTTTGAAAATATTAG----AATTTCAAAATTTCAGAACTCCAAAATTACAGAATTTTGAAATCTCAG-AATTT---GAAATTCTCAAAGTTTGAAATTCCTGGAACTCGGA-------
cbrenneri	---------------------GTTTCTGCAATTCGCAT----GATTTCAAA----------CTGCGCTGAAGAACAATTTGAAATCT-----ATCTGACAGAAAT------------------------------------
cjaponica	---------CGCTGAACTCAACGCTATGCGATTTTCATTTTGGTCTCCAAATTATTTCATTTCACGTATAAATTCAACATGAAATCAAAT-AATTT---GGAGA---CCAAAATGGAAATCGAATAGCGTTGAGTTCAGCG
ppacificus	--------------------------TATAAAGTGAAGACCTGATTGAA------------TTCCTCTGTATCGCGAACTGAAATCTCTTCACTCTTGTA-----------------------------------------
	* * *******
celegans	((((..(..((((((((((((((.((.(((((...( ((((((((....))) )))))).))))).)).))))))))))))))..)..))))	1.000 -32.20
cremanei	(((..((( ((.(((.... (((.((((((((((....)))) )).)))).)))))). )))))..)))	0.993 -13.00
cbriggsae	((((.(((.(((((..(((((((((((((........( (((((((((.(((.(((....(((((((....)))))))...))).)) ).))) ))))))))))))))))))))...))))))))))))	0.997 -35.40
cbrenneri	(((((((....(((.(( ((((((((( .((..........)).))))))))). )).))))))))))	0.978 -13.30
cjaponica	((((((((((((((((((.(((((((((((((((((((((((((((((.((((((.((.........)).)))))).)))) ))))) ))))) ))))))))))))))).))))))))))))))))))	1.000 -79.60
ppacificus	(((((((((((((...((((... (((...........)))....)))))))))))).)))))	0.892 -10.70

celegans	chromosome:V:3042091:3042180:-1	intergenic ## {SimpF: WRM0623bG08 -1 fosmid,WRM0614aB12 -1 fosmid,WRM0624bG01 -1 fosmid,WRM0638aC03 -1 fosmid,WRM0622cA02 -1 fosmid,WRM0615aE03 -1 fosmid} ## {MIR: cel-mir-792}
cremanei	chromosome:chrUn:67954661:67954790:1	Same_strand\|Intronic_coding\|NM_001087437
cbriggsae	chromosome:chrII:3428513:3428638:-1	Opposite_strand\|Intronic_coding\|NM_012623 ## {Repeats: DNA8-12_CB 327 419 -1 class=DNA,MINISAT4_CB -2 553 1 class=Satellite,HELITRON7_CB -577 804 1 class=RC} ## {SimpF: trf}
cbrenneri	chromosome:chrUn:173017142:173017271:-1	intergenic
cjaponica	chromosome:chrUn:137584682:137584806:1	intergenic
ppacificus	chromosome:chrUn:27677621:27677750:-1	Same_strand\|Intronic_coding\|NM_015802

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