C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-mir-793

cel-mir-793

Cloning frequencies
absolute	CE1
cel-mir-793 3arm	7
normalized	CE1
cel-mir-793 3arm	0.005

cel-mir-793 relative cloning frequencies

block8564 (miRBase cel-mir-793) [miRNAknown_lenNOK_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-793	0.001	no	no	0.36/0.38	19/22/0.50	0.0	0.9	7	0	1	0	16	7	3arm	1	nd	0.14	2	7	1	na	na

block8564 hairpin

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------GAGGUAU-----------------------------------------	7	novel
		len	cloning frequencies
			CE1
	----------------------------------------------------------------------------TGAGGTATCTTAGTTAG---------AC---------------------	19	4
	----------------------------------------------------------------------------TGAGGTATCTTAGTTAG---------ACAG-------------------	21	3
cel-miR-793	----------------------------------------------------------------------------TGAGGTATCTTAGTTAG---------ACAGA------------------	22	-
celegans	-----------------TGGTTGGTA---AAAGTCTGTTTAACTATTGTACA-TCACAATTTTCACTGCGAAAAATTGAGGTATCTTAGTTAG---------ACAGA---CATATACTACAACCA
cremanei	-----------------TTTTCTGTATCTATAATACGACAGATATTAGAGAT---TGTATAT-------------TCGAGGTATGGAAACTGG---------------------------AAATG
cbriggsae	----------------ATTTCAGATA---AAAAACCATCAAAAAAATGCGAT-TCTGCATTT-------------TTGAGGTATTTTCTCTAG----------CAG-------------------
cbrenneri	-----------------CTGCTTATC---CGGTTCTTCTCCACACCTGTAAC-TGGGTATAT-------------ATGAGGTATCAAGGATTG---------GTGG-------------------
ppacificus	TGCGTAAGAAGGCCGAGGTACAGAGT---AGAGCTCGAGAAATTATTCCACCGTCTCCTAATTAAAATGAAGAGACGGAGGTATCATTTCTCGAGCTCTAGTACAGAGTCCACCCATTCCATGCA
	* * ******* * *
celegans	.(((((((( ...(((((((((((((..((((. (((...(((((.....)))))..))).))))..))))))) ))))) )...)))..))))).	1.000 -33.10
cremanei	(((((.((.((((((...(((...((((....... .)))).. )))...)))))).)).)) )))..	0.992 -12.30
cbriggsae	.....(((.( (((.(((.(((..((((((((.. ..))))))) ))))))).)))).))).. ...	1.000 -14.40
cbrenneri	(((((.((( ((((.((((.....((((..... .)))).... ..)))).)))..)))).) ))))	0.988 -15.40
ppacificus	.((((..(((((..((.((((....( ((((((((((((((.((.((.(((((((...((....))...))))))).)).)).)))))))))))))))))))....))...)).))).)))).	0.975 -46.70

celegans	chromosome:X:13857885:13857976:1	intergenic ## {SimpF: WRM0640bD03 1 fosmid,WRM0634aB03 1 fosmid,WRM0629cD08 1 fosmid,WRM068bH11 1 fosmid,WRM0628dG05 1 fosmid} ## {MIR: cel-mir-793}
cremanei	chromosome:chrUn:118388946:118389077:-1	intergenic ## {SimpF: trf,trf}
cbriggsae	chromosome:chrX:1283957:1284088:1	Opposite_strand\|Intronic_coding\|NM_001089360 ## Same_strand\|Intronic_coding\|NM_007473
cbrenneri	chromosome:chrUn:138702153:138702284:-1	Opposite_strand\|Boundary_coding\|NM_062415
ppacificus	chromosome:chrUn:155454787:155454908:-1	Same_strand\|Intronic_coding\|NM_073261 ## Opposite_strand\|Intronic_coding\|NM_001077648

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