miR-Intess: cel-mir-794

cel-mir-794

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-794	0.007	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	14	5	5arm	1	nd	0.23	2	1	1	na	na

		reads	miRBase family seed
seed	---------------GAGGUAA---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			CE1
cel-miR-794	--------------TGAGGTAATCATCGTTGTCACT-------------------------------------------------------	22	1
celegans	CTGAGCGTGTCTCTTGAGGTAATCATCGTTGTCACTTCGCAAAGTTGGAA------TTGAAAACGTTGTCTATCTCGAAAGGCTTATCAG-
cremanei	--------------TGAGGTAAT-------------------GGCTGGAAATATCGACGACGAAACGGATTTTTTCGCCATTTTTTTCTCT
cbrenneri	-------------AGGAGGTAAT----------TCTCCGTTTGGCTGTGG------CCGAATGCTCGGGCAAGAGCGGTGAACGTCTTCCT
ppacificus	--------------AGAGGTAACGCTTTTTGATTCTT------GGTGGAA------GCAAGCAAGCAAGTTAGTTCG--------------
	******* * ** * **
celegans	((((....((((.((((((((..((.((((.(((.(((.((....))))) .))).)))).))..)))))))).))))...))))	1.000 -27.10
cremanei	.((((.((( (((.(((((.(((..((......))))).)))))))))))....)))).	0.999 -15.20
cbrenneri	((((((...( ((.((((((.....((. ((((....)))).)).)))))).)))...))))))	0.929 -25.70
ppacificus	.(((.((((((((((((.((((. ...)))) .)))).))))..)))).))).	1.000 -13.90

celegans	chromosome:I:12595679:12595762:1	intergenic ## {SimpF: WRM0624dH02 1 fosmid,WRM0612aE11 1 fosmid,WRM0638dG06 1 fosmid} ## {MIR: cel-mir-794}
cremanei	chromosome:chrUn:83560617:83560740:1	intergenic
cbrenneri	chromosome:chrUn:105462742:105462803:-1	Same_strand\|Intronic_coding\|NM_073857 ## Opposite_strand\|Intronic_coding\|NM_071200
ppacificus	chromosome:chrUn:158296156:158296279:-1	Same_strand\|Intronic_coding\|NM_063800