C.elegans small RNAs

miR-Intess™

miR classification

miR expression

cel-mir-796

cel-mir-796

block7651 (miRBase cel-mir-796) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-796	0.001	no	no	0.35/0.35	23/23/1.00	nd	nd	0	0	0	0	15	3	5arm	1	nd	0.17	2	0	0	na	na

block7651 hairpin

		reads	miRBase family seed
seed	-------------------------------------GGAAUGU------------------------------------------------------------------------------------------------------------	0	miR-1
		len	cloning frequencies

cel-miR-796	------------------------------------TGGAATGTAGTTGAGG---TTAGTAA------------------------------------------------------------------------------------------	23
celegans	---------------------ACTCTAATGACAAGCTGGAATGTAGTTGAGG---TTAGTAAAAGCACTATACTTGTTACAAAC-CTTGCCACGTTCC-------------GACTTGTCAAAAGAGT-------------------------
cremanei	TCGTCTTGA-ACTTCCTCGTCTCCTTCGGTTGCCTTTGGAATGTCGGTGAGAGCGTTGGTGAGTACCTCATCCT-----CAACC---------TTTCC-------------GAGTTCGAGAAGCGCCTTTCCGTAGAGGAAGTTGACCTCGA
cbriggsae	-------GCTACACCATCTTCAC------------CTGGAATGT------GC---CTAGTTTGTAGACTATCCTGT---CGAAC-----TCACTTCCA-------------CTTTGGTGGAGCTTCGTGTACAGC-----------------
cbrenneri	----------AGTTTTTGGTGAATTGCCAGCCAAAACGGAATGTTGCT-CGC---TTAGAAAAATCACGATTTG-----CAAGCACCAGCCACTTTCC-------------GTTTTCTTGCCGCAGTCATTCAGCAAACAACT---------
cjaponica	-------GCAATGGAAAAGTGACAATAAGGACAAACTGGAATGTGT---GGAATCTACGTACAAATAC-GTCTG-----GGACTGTTTTGCACTTCCA-------------CTTTTGTTC--------------------------------
ppacificus	TAATTGAGAAAGATAATTATGAT------ATCGCAGTGGAATGTAGTTTGAA----ATGTAAAGGGATGAGCCT-----TCATCAGTTGGCCCTTCCCATGCTACTCTGCTGCGTTGTGATAGTCGTTTTCCGTTG----------------
	******* * * * * *
celegans	(((((..(((((((.((((((((.(..(((( ((.(((((((.......))).)))).))) )))..)))))))) ).)))))))..)))))	1.000 -35.50
cremanei	..(((...( ((((((((.........((.(((.(((.((((.((((...(((.(((((((((...)))))... ))))) )).)) )))))).))).)))))........)))))))))))).....	0.955 -38.03
cbriggsae	(((((((...(((((( ((((((.(( (. ..(((((((((......))). ))))) ))))))))) ....)))))))....))))..)))	1.000 -27.30
cbrenneri	((((((((.((((((((..((.(((((((((.((.((( .(( ((....((((....)))). .))))...))).)).)))) )))))...)).)))))...))).)))).))))	0.999 -29.90
cjaponica	.....................(((((((.(((((.(((. .(((((((((((....))) ))... )))...)))..)))))))) ..)))))))	0.829 -21.50
ppacificus	((((.(((((.(((.(((((((. ..(((((..((..(((((..... (((..(((((.(((.... ...))).....)))))..))))))))))..)))))))))))).))).))))).))))	0.941 -36.20

celegans	chromosome:X:1798924:1799012:-1	intergenic ## {SimpF: WRM0634aB01 -1 fosmid,WRM065dB05 -1 fosmid,WRM068aC12 -1 fosmid,WRM0639cA04 -1 fosmid,WRM0619dF11 -1 fosmid,WRM0618dG07 -1 fosmid} ## {MIR: cel-mir-796}
cremanei	chromosome:chrUn:116332607:116332730:-1	Same_strand\|Intronic_coding\|NM_071930
cbriggsae	chromosome:chrV_random:1354380:1354465:1	Same_strand\|Intronic_coding\|NM_062003 ## Same_strand\|Boundary_non-coding\|NM_069221
cbrenneri	chromosome:chrUn:169086564:169086674:-1	intergenic
cjaponica	chromosome:chrUn:15517346:15517436:1	Same_strand\|Exonic_coding\|NM_074729
ppacificus	chromosome:chrUn:98819157:98819277:1	Same_strand\|Intronic_coding\|NM_058427

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