cel-mir-800
| absolute | CE1 |
| cel-mir-800 5arm | 1 |
| normalized | CE1 |
| cel-mir-800 5arm | 0.001 |
sblock60 (miRBase cel-mir-800) [miRNAknown_rep_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-800 | 0.001 | no | Satellite,UNKNOWN | 0.48/0.50 | 21/22/1.00 | 0.0 nd | 0.0 nd | 1 0 | 0 0 | 1 0 | 0 0 | 8 4 | 3 6 | 5arm 3arm | 1 1 | nd nd | 0.05 0.09 | 1 1 | 1 | 1 | 3 | 4 |
| reads | miRBase family seed | ||
| seed | ----------------------------GACAAUU------------------------------------------------------------------------------ | 1 | novel |
| seed | -------------------------------------------------------------------------AAACUCG--------------------------------- | 0 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------TGACAATTTCCGAGTTAGGCC----------------------------------------------------------------- | 21 | 1 | |
| cel-miR-800 | ------------------------------------------------------------------------CAAACTCGGA---------------AATTGTCTGCCG---- | 22 | - |
| celegans | -------------------ACGGCGGCTGACAATTTCCGAGTTAGGCCAC---TCTTATAATCAGTG---GCCAAACTCGGA---------------AATTGTCTGCCGCCGT | ||
| cremanei | --------------------GGACAA-------TTCCGAGAT-----------TCCGAAATTCCGAAATTTTGAAACTCGGA--------------CATTTTTTAGTGTCC-- | ||
| cbriggsae | ---------------------GATATTCTAATATTTCGAATT-----------TCTGAAAATCCGAGTTTTCGAAACTCGGA--------------AATTCGAATATT----- | ||
| cbrenneri | -----------------------TAA-------GTTCTACATATAACCGATGTTATGCTTATTGG-----TCGAAACTCGGA--------------AATGTGAATTGG----- | ||
| cjaponica | GTGGAAAAGTTGCAAGTCTGCGGTGCAGTTT--TTCCTGAAT-----------TTTACAACTCTTTCAGTACAAAACTCGTA-----------------CCGCAGACTTGCAA | ||
| ppacificus | ATGGCCCGAAATGGGATCAAAGGCAGTCGT---TTTCGAGTTCCGACGGAGCGTTTTAACTTCCGGAA--TTGAAACTCGAAGGGCGTGGGCAACGAATCAGAGGGGACACGT | ||
| * * * * * ******* * | |||
| celegans | ((((((((.(((((((((((((((.(((((( (.........)))) ))).)))))))) ))))))).)))))))) | 1.000 -54.70 | |
| cremanei | (((((. .((((((.( (.(((((((....))))))))).)))))) ..........))))) | 0.932 -16.10 | |
| cbriggsae | (((((((.(((.((((((.(( ((.((((((....)))))))))).))))) )))).))))))) | 0.618 -16.30 | |
| cbrenneri | ..( ((((.((((....((((.(((.((((....)) .)).))))))). .))))))))).. | 0.825 -11.90 | |
| cjaponica | .........(((((((((((((((((((((( (..(((((. ...........)))))...)))))).))) )))))))))))))) | 1.000 -39.00 | |
| ppacificus | .((.(((....(((..((....((...((( (((((((((.((((((((.((....)))))))... ))).)))))))))).))...))...)).)))..)))..))... | 0.883 -29.10 |
| celegans | chromosome:X:380920:380992:-1 | intergenic ## {Repeats: Ce000146 154 175 -1 class=UNKNOWN,Ce000146 114 136 -1 class=UNKNOWN} ## {SimpF: CEOPX174 1 Operon,WRM066aD01 -1 fosmid,WRM069bH07 -1 fosmid,WRM0624dG06 -1 fosmid,WRM068bD10 -1 fosmid,WRM0612cG04 -1 fosmid,WRM061dE09 -1 fosmid} ## {MIR: cel-mir-800} |
| cremanei | chromosome:chrUn:130371960:130372072:-1 | intergenic ## {SimpF: trf,trf,trf,trf} |
| cbriggsae | chromosome:chrIII:12219361:12219473:-1 | Opposite_strand|Intronic_coding|NM_001122952 ## Same_strand|Intronic_coding|NM_075505 ## {Repeats: MINISAT4_CB 63 495 -1 class=Satellite} ## {SimpF: trf} |
| cbrenneri | chromosome:chrUn:191649389:191649501:-1 | intergenic |
| cjaponica | chromosome:chrUn:104843643:104843725:-1 | intergenic |
| ppacificus | chromosome:chrUn:15323722:15323829:-1 | Same_strand|Intronic_coding|NM_001055022 |
©2008 InteRNA Genomics B.V.