cel-mir-85
| absolute | CE1 |
| cel-mir-85 5arm | 1 |
| cel-mir-85 3arm | 131 |
| normalized | CE1 |
| cel-mir-85 5arm | 0.001 |
| cel-mir-85 3arm | 0.092 |
sblock17 (miRBase cel-mir-85) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-85 | 0.001 | no | no | 0.27/0.35 | 20/25/0.91 | 0.0 0.0 | 0.0 0.0 | 1 115 | 0 0 | 1 1 | 0 0 | 19 17 | 5 10 | 5arm 3arm | 1 1 | nd nd | 0.09 0.17 | 1 1 | 132 | 1 | 2 | 2 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------------------------------ACAAAGU---------------------------------- | 118 | miR-85 |
| seed | --------------------------------------------------------------------------------------------------------------U--ACAAAG----------------------------------- | 11 | novel |
| seed | ------------------------------------------------------------------------------------------------------------------CAAAGUA--------------------------------- | 1 | novel |
| seed | ---------------------------------------------------------------------------------------------------------------------AGUAUUU------------------------------ | 1 | novel |
| seed | --------------------CGAUUUU------------------------------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-85 | --------------------------------------------------------------------------------------------------------------T--ACAAAGTATTTGAAAAGTCGTGC------------------ | 24 | 115 |
| -------------------------------------------------------------------------------------------------------------TT--ACAAAGTATTTGAAAAGTCGTGC------------------ | 25 | 11 | |
| -------------------CCGATTTTTCAA-----------------------------------TAGTTTGAAAC----------------------------------------------------------------------------- | 23 | 1 | |
| --------------------------------------------------------------------------------------------------------------T--ACAAAGTATTTGAAAAGTCGTGCT----------------- | 25 | 1 | |
| --------------------------------------------------------------------------------------------------------------------AAGTATTTGAAAAGTCGTGC------------------ | 20 | 1 | |
| --------------------------------------------------------------------------------------------------------------T--ACAAAGTATTTGAAAAGTCGTG------------------- | 23 | 1 | |
| --------------------------------------------------------------------------------------------------------------T--ACAAAGTATTTGAAAAGTCGT-------------------- | 22 | 1 | |
| -----------------------------------------------------------------------------------------------------------------ACAAAGTATTTGAAAAGTCGTGC------------------ | 23 | 1 | |
| celegans | AGAATTTTGGCGTCGGAGCCCGATTTTTCAA-----------------------------------TAGTTTGAAACCAGTGTAC-----------ACATA---AATGGTT--ACAAAGTATTTGAAAAGTCGTGCTCTGAAAATGAATTCTT- | ||
| cbriggsae | -------------------CCGCTTTTTCAG-----------------------------------TAGTTTGAAACCAGAGATG-----------ATA-----GTTGGTT--ACAAAGTATTTGAAAAGGCGT-------------------- | ||
| cbrenneri | ----------------GTCCCATATCTCAAAAGTGGGCGGAGCAAGATAGTTGTCAATTGCAAACTTGTTCCAAATTCAATTCTG-----------ACAAAGTTTGCAGTT-GACAACTTTTTTCTAGCTCCGCCCACTTTTGAGATGGGGGAC | ||
| cjaponica | -------------------CCGGCTTTTCAT-----------------------------------TTGTTTGAAACCAGCCAAG-----------ACGAGTATGGTGGTT--ACAAAGTATTTGAAAAGTCGT-------------------- | ||
| ppacificus | -------------------AAGTGTCGTGAA-----------------------------------AGATTTTGAATGAACGCCAGATGTTTTACTGCAAA---TGTGGTCATACAAAGTATTTCACGGCACGT-------------------- | ||
| cremanei | ----------------AGCCCGTCTTTCCAA-----------------------------------TATTTTGAAACCAGTACTC-----------ATGCA---AATGGTT--ACAAAGTATTCGAAAAGGCGTGCT----------------- | ||
| * * * * * ** **** * ** ** | |||
| ------------------------------------ ------------------- ----- ------- ---------------------------------------- --<<< | F49E12.8 F49E12.8 F49E12.8 | ||
| celegans | (((((((.....(((((((.((((((((((( ((.((((.((((((((... .))). ..))))) .)))).)))).))))))))).)))))))....))))))). | 1.000 -39.90 | |
| cbriggsae | .((((((((((( ((.((((.((((((..... ... .)))))) .)))).)))).))))))))). | 1.000 -22.30 | |
| cbrenneri | (((((.(((((((((((((((((((((.(((.((((((((((((((((((((((..((......))..) )))).)))))))))) )))))))....))).))))))))))))))))))))).))))) | 1.000 -80.60 | |
| cjaponica | .((((((((((. .((((((.(((((.(((.. .......)))))))) .)))).))..)))))))))). | 1.000 -23.60 | |
| ppacificus | ..(((((((((( (.((((((.((((.((.((..(((......))).. )))).)))).)))))).))))))))))).. | 0.999 -29.40 | |
| cremanei | (((.((((((((.(( (((((((.(((((...... ..... ..))))) .))))))))).)))).)))).))) | 1.000 -23.22 |
| celegans | chromosome:II:8393487:8393588:1 | Opposite_strand|Intronic_coding|F49E12.8|F49E12.8 ## F49E12.8|protein_coding|F49E12.8|F49E12.8 [Source:RefSeq_peptide;Acc:NP_495765] ## {SimpF: WRM061cH06 1 fosmid,WRM0639cA01 1 fosmid,WRM0637aE12 1 fosmid,WRM063cE11 1 fosmid,WRM069dB01 1 fosmid,WRM0639bA04 1 fosmid,F49E12.8 1 Expression_profile,WRM0631cF05 1 fosmid,WRM0640aC08 1 fosmid,WRM0619bH02 1 fosmid} ## {MIR: cel-mir-85} |
| cbriggsae | chromosome:chrII:3615900:3616041:-1 | Same_strand|Intronic_coding|NM_001111027 ## Opposite_strand|Intronic_coding|NM_063364 ## {MIR: cbr-mir-85} |
| cbrenneri | chromosome:chrUn:146993383:146993508:-1 | Opposite_strand|Intronic_coding|NM_001038367 ## Same_strand|Intronic_coding|NM_060847 |
| cjaponica | chromosome:chrUn:39526936:39527077:1 | Opposite_strand|Intronic_coding|NM_063364 |
| ppacificus | chromosome:chrUn:171896092:171896233:1 | Opposite_strand|Intronic_coding|NM_001039484 ## Same_strand|Intronic_coding|NM_018830 |
| cremanei | chromosome:chrUn:7600986:7601055:1 | Opposite_strand|Intronic_coding|NM_001047948 |
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