C.elegans small RNAs

miR-Intess™

miR classification

miR expression

block3587_cand

block3587_cand

Cloning frequencies
absolute	CE1
block3587_cand 5arm	1
normalized	CE1
block3587_cand 5arm	0.001

block3587_cand relative cloning frequencies

block3587 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.67/0.67	24/24/1.00	0.0	0.0	2	0	1	0	16	9	5arm	2	nd	0.25	2	2	1	na	na

Families
Member of family novel4 (seed GCCAAGC): block2960_cand, block3587_cand

block3587 hairpin

		reads	miRBase family seed
seed	-----------------GCCAAGC--------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			CE1
	----------------TGCCAAGCGCTACG-TCACCAGGGG---------------------------------------------------------------------------	24	2
celegans	GTCGACCGAGCGTCCGTGCCAAGCGCTACG-TCACCAGGGGATAACTGTCGGAAGGC-GGTTAGTCCCGGGTGCATAAGGAGTCGTGGATGGTTCAGGACCGAAAGGTAGCAGACA
cremanei	----------------TGCCAAGCGCTGCGTTCACTAGGGGTCATCCTTCGGAAGAG-GGGCGGTCCCGGGTGCATAAGGAGCGGTGGATGGTT----------------------
cbriggsae	----------------TGCCAAGCGCTACG-TCGCCAGGGGTTGTCTGTCGGAGGAC-GGACGGTCCCGGGCGCATAAGGAGTGGTCTA---------------------------
cbrenneri	---------GCGTCCGTGCCAAGCGCTACG-TCGCTAGGGGTCATCAGACGGAAGTT-TGAAGGTCCCGGGCGCATAAGGAGTGGTGTATGGTTCAGG------------------
cjaponica	----------------TGCCAAGCGCCGCG-TCGCCAGGGGCAGTCTGTCGGAAGGCTGGGCTGTCCCGGGTGCATAAGGAGCGGTGTA---------------------------
	******** ** * ***** * **** * * ****** ****** *
celegans	(((.(((...(((((..((((.(((((..( (((((.(((..((((((((....))) )))))..))).)))).))....)).)))...))))...))).))...)))....))).	0.920 -49.10
cremanei	.((((..((((((...((((.((((((..(((((....))) ))..)))))).))))........))))))..)))).	1.000 -34.90
cbriggsae	.((((....((..( (((((.(((..((((((((....))) )))))..))).)))).))..))..))))...	0.985 -33.00
cbrenneri	....((..((((.(((((((. .((((.((((((.((((((....))) ))).)))))).))))........))))))).))))...))	0.999 -37.90
cjaponica	......(((((((. .((((.(((((((((((((....))).)))))))))).))))........))))))).	1.000 -40.50

celegans	chromosome:III:5211275:5211388:1	intergenic ## {SimpF: WRM0613bD07 1 fosmid,WRM067cB03 1 fosmid,WRM0621cH09 1 fosmid,WRM0641dA10 1 fosmid}
cremanei	chromosome:chrUn:133256206:133256359:1	Opposite_strand\|Exonic_coding\|NM_065481 ## Same_strand\|Intronic_coding\|NM_001002694
cbriggsae	chromosome:chrX:20313769:20313922:-1	Opposite_strand\|Exonic_coding\|NM_065481
cbrenneri	chromosome:chrUn:171087346:171087432:1	intergenic
cjaponica	chromosome:chrUn:142157721:142157874:1	Opposite_strand\|Exonic_coding\|NM_065481 ## Same_strand\|Intronic_coding\|NM_073733

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