cel-mir-237
| absolute | CE1 |
| cel-mir-237 5arm | 679 |
| cel-mir-237 3arm | 1 |
| normalized | CE1 |
| cel-mir-237 5arm | 0.474 |
| cel-mir-237 3arm | 0.001 |
sblock76 (miRBase cel-mir-237) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-237 | 0.001 | no | no | 0.42/0.50 | 18/24/0.99 | 0.0 0.0 | 0.0 0.0 | 490 1 | 0 0 | 1 1 | 0 0 | 15 25 | 4 6 | 5arm 3arm | 1 1 | nd nd | 0.22 0.18 | 2 2 | 680 | 1 | 2 | 2 |
| Member of family lin-4 (seed CCCUGAG): cel-lin-4, cel-mir-237 |
| reads | miRBase family seed | ||
| seed | ------------------------CCCUGAG--------------------------------------------------------------------------------------- | 664 | lin-4 |
| seed | -------------------------CCUGAGA-------------------------------------------------------------------------------------- | 9 | novel |
| seed | ----------------------------GAGAAUU----------------------------------------------------------------------------------- | 6 | novel |
| seed | -------------------------------------------------------------UGUCGAG-------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-237 | -----------------------TCCCTGAGAATTCTCGAACAGCT------------------------------------------------------------------------ | 23 | 490 |
| -----------------------TCCCTGAGAATTCTCGAACAGC------------------------------------------------------------------------- | 22 | 86 | |
| -----------------------TCCCTGAGAATTCTCGAACAGCTT----------------------------------------------------------------------- | 24 | 84 | |
| ------------------------CCCTGAGAATTCTCGAACAGCT------------------------------------------------------------------------ | 22 | 8 | |
| ---------------------------TGAGAATTCTCGAACAGCT------------------------------------------------------------------------ | 19 | 4 | |
| ---------------------------TGAGAATTCTCGAACAGC------------------------------------------------------------------------- | 18 | 2 | |
| -----------------------TCCCTGAGAATTCTCGAA----------------------------------------------------------------------------- | 18 | 2 | |
| -----------------------TCCCTGAGAATTCTCGAAC---------------------------------------------------------------------------- | 19 | 1 | |
| ------------------------CCCTGAGAATTCTCGAACAGCTT----------------------------------------------------------------------- | 23 | 1 | |
| -----------------------TCCCTGAGAATTCTCGAACAG-------------------------------------------------------------------------- | 21 | 1 | |
| ------------------------------------------------------------CTGTCGAGTTTTGTCAAGGACC------------------------------------ | 22 | 1 | |
| celegans | --------TTCTACATTGCGTGGTCCCTGAGAATTCTCGAACAGCTTCAAAGTGTTCAAGCTGTCGAGTTTTGTCAAGGACCAAACAATAGAAGATCACTTGGGAAC----------- | ||
| cbriggsae | GTCTTGAAAACCATGTTTGGTGGTCCCTGAGAATGCTCCGACATCTTCGAAGTAGCGTAGCTGTCGAGCACCATTGGGGAC----CAGCGGATTTTTGGTTATAATTTTTTTCAAGTC | ||
| cjaponica | -----------------------TCCCTGAGAATT-TCAGAC-----CGAAATA---------TTGATTTTTA----------------AAAATATCGGTTTGAATTTTTCGCTGG-- | ||
| *********** ** ** * ** * * ** * * ** * | |||
| celegans | (((((..(((..((((((.(((.((..(((((.((((((.((....)).)))))))))))..)).))).))))))..)))))))).............. | 1.000 -35.80 | |
| cbriggsae | ..(((((((((((.(((((.((((((((((...((((.(((((.((.((......)).)).)))))))))...)))))))) )).)))))...))))).........)))))).. | 0.995 -45.60 | |
| cjaponica | .((.((((((.( (((((( (((.((. ((........ )).)).)))))))))).))))))..)) | 1.000 -17.80 |
| celegans | chromosome:X:8154027:8154125:1 | intergenic ## {SimpF: WRM0617cF01 1 fosmid,WRM062bG07 1 fosmid,WRM0626dE12 1 fosmid,WRM0623aD07 1 fosmid,WRM0625aE09 1 fosmid,WRM0630bD06 1 fosmid,WRM064dB06 1 fosmid,WRM0640aE02 1 fosmid,WRM0618bC06 1 fosmid,WRM0627aE06 1 fosmid,WRM068aD07 1 fosmid} ## {MIR: cel-mir-237} |
| cbriggsae | chromosome:chrX:16201672:16201785:1 | intergenic |
| cjaponica | chromosome:chrUn:67487592:67487730:1 | Same_strand|Intronic_coding|NM_059827 |
©2008 InteRNA Genomics B.V.