cel-mir-239a
| absolute | CE1 |
| cel-mir-239a 5arm | 28 |
| cel-mir-239a 3arm | 54 |
| normalized | CE1 |
| cel-mir-239a 5arm | 0.020 |
| cel-mir-239a 3arm | 0.038 |
sblock78 (miRBase cel-mir-239a) [miRNAknown_lenNOK_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-239a | 0.001 | no | no | 0.33/0.50 | 18/24/0.49 | 0.0 0.0 | 0.0 0.0 | 26 39 | 0 0 | 1 1 | 0 0 | 15 23 | 1 2 | 5arm 3arm | 1 1 | nd nd | 0.17 0.17 | 2 2 | 82 | 1 | 1 | -3 |
| Member of family miR-239a (seed UUGUACU): cel-mir-238, cel-mir-239a |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------AGUGUCU---------------------------------- | 43 | novel |
| seed | ------------------------UUGUACU------------------------------------------------------------------------------- | 27 | miR-239a |
| seed | ----------------------------------------------------------------------GUGUCUA--------------------------------- | 11 | novel |
| seed | -----------------------UUUGUAC-------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------------------------------------------------------------CAGTGTCTAGTCTAGTGC------------------------ | 18 | 39 | |
| cel-miR-239a | -----------------------TTTGTACTACACATAGGTACTG--G-------------------------------------------------------------- | 23 | 26 |
| ---------------------------------------------------------------------AGTGTCTAGTCTAGTGCAAAC-------------------- | 21 | 9 | |
| --------------------------------------------------------------------CAGTGTCTAGTCTAGTGCAAAC-------------------- | 22 | 3 | |
| --------------------------------------------------------------------CAGTGTCTAGTCTAGTGCA----------------------- | 19 | 1 | |
| ---------------------------------------------------------------------AGTGTCTAGTCTAGTGCA----------------------- | 18 | 1 | |
| -----------------------TTTGTACTACACATAGGT--------------------------------------------------------------------- | 18 | 1 | |
| ---------------------------------------------------------------------AGTGTCTAGTCTAGTGCAAACA------------------- | 22 | 1 | |
| ----------------------TTTTGTACTACACATAGGTACTG--G-------------------------------------------------------------- | 24 | 1 | |
| celegans | ----TACACGTT----TGCAATTTTTGTACTACACATAGGTACTG--GACAATTT-TCAAAATATATCCAGTGTCTAGTCTAGTGCAAACATTGCTCGGTGTTGTTTGA- | ||
| cbriggsae | --GATCCAAGTTTA--TGCGATTTTTGTACTACAATTAGGTACTG--GACACCAGCAGCGAGTGTATCCAGAATCTATACTAGTACAAAAATAGCTAACAGGATT----- | ||
| cjaponica | -----------------------TTTGTACTACACATAGGTACTGGTGAAAACGT------GTTTAACCAGTGCCTGGTCTAGTGCAAG--------------------- | ||
| cbrenneri | TTGATATAACCTGAAATGCGGTTTTTGTACTACACATAGGTACTG--GAAAACTTACCACAGATTATCCAGTGCTTGGTCTAGTGCAAGAATTGCTAAGGGGGTTTTCAA | ||
| cremanei | --AATCCAAGAT----TGCGATTTTTGTACTACACATAGGTACTG--GACACTGA---GATTTGTATCCAGAATCTATTCTAGTGCAAAAATTGCTCTGGATT------- | ||
| *********** ********* ** * ** **** * ***** *** | |||
| celegans | .((((... .(((((.(((((((((.((.(((..(((( ((...... ..........))))))..))))).))))))))).)))))...))))....... | 1.000 -32.69 | |
| cbriggsae | (((((..(((.. .((.((((((((((((....(((((.((( ((.((..((.....)))).))))).)))))...)))))))))))).)).))).))))) | 0.998 -31.80 | |
| cjaponica | .((((((((.((.(((((((((((..(((... .))).))))))))))))).)))))))). | 1.000 -28.40 | |
| cbrenneri | .(((...(((((.....(((((((((((((((.((.((((((((( ((.((((......)).)).))))))))))))).))))))))))))))).....))))).))). | 1.000 -42.40 | |
| cremanei | (((((.(((. .(((((((((((((((...((((((.((( ((.((... .....)).))))).))))))..))))))))))))))))))))))) | 1.000 -38.10 |
| celegans | chromosome:X:11792369:11792466:1 | intergenic ## {SimpF: WRM0624bH08 1 fosmid,WRM067bC07 1 fosmid,WRM064aB01 1 fosmid,WRM0632aD05 1 fosmid,WRM068cE04 1 fosmid,WRM0621bA09 1 fosmid,WRM0628bH10 1 fosmid,WRM0624aG10 1 fosmid,WRM0610bH05 1 fosmid} ## {MIR: cel-mir-239a} |
| cbriggsae | chromosome:chrX:15175315:15175413:1 | Same_strand|Intronic_coding|NM_001099298 ## Opposite_strand|Intronic_coding|NM_077585 ## {MIR: cbr-mir-239a} |
| cjaponica | chromosome:chrUn:61791059:61791196:-1 | intergenic |
| cbrenneri | chromosome:chrUn:34416635:34416742:-1 | intergenic |
| cremanei | chromosome:chrUn:26917103:26917194:-1 | intergenic |
©2008 InteRNA Genomics B.V.