miR-Intess: cel-mir-62

cel-mir-62

Cloning frequencies
absolute	CE1
cel-mir-62 3arm	36
normalized	CE1
cel-mir-62 3arm	0.025

block8513 (miRBase cel-mir-62) [miRNAknown_cloningHIGH_shortStem_mirtron_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cel-mir-62	0.001	no	no	0.26/0.32	18/22/0.86	0.0	0.8	31	0	1	0	0	6	3arm	1	0	0.15	2	36	1	na	na

Families
Member of family miR-50/62/90 (seed GAUAUGU): cel-mir-50, cel-mir-90, cel-mir-62

		reads	miRBase family seed
seed	--------------------------------------------------GAUAUGU-----------------	36	miR-50/62/90
		len	cloning frequencies
			CE1
	-------------------------------------------------TGATATGTAATCTAGCTTAC-----	20	19
cel-miR-62	-------------------------------------------------TGATATGTAATCTAGCTTACAG---	22	12
	-------------------------------------------------TGATATGTAATCTAGCTT-------	18	4
	-------------------------------------------------TGATATGTAATCTAGCTTA------	19	1
celegans	-------------GTGAGTTAGATCTCATATCCTTCCGCAAAATGGAAATGATATGTAATCTAGCTTACAG---
cbriggsae	----TATTATAAGGTGGGTTAGATCCCATATCCTTCCGCTTGATGGAAATGATATGTAATCTAGCTTACAG---
cjaponica	-----------TGGTGAGTTAGATCTCATATCCTTCCGGAAAATGGAAATGATATGTAATCTAGCTTACAG---
cbrenneri	CAGCTATAGTAAGGTGAGTTAGATATCGTATCCTTCCGCTTAATGGTAATGATATGTAATCTAGCTTACAG---
ppacificus	ACCCTTCTTTA---------------CATATCGTCTCGCTCGAGCGAGACGATATGTAA---AGACCCTAGGGA
	* **** * ** * * * ******* **
	>>>>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ >>>>>	T07C5.1b T07C5.1 ugt-50
	>>>>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ >>>>>	T07C5.1c T07C5.1 ugt-50
celegans	(((((((((((..((((((.(((((.....)))))..))))))..)))))))))))..	1.000 -25.10
cbriggsae	.........(((((((((((..((((((.(((((.....)))))..))))))..)))))))))))..	0.999 -24.60
cjaponica	..(((((((((((..((((((.(((((.....)))))..))))))..)))))))))))..	1.000 -25.90
cbrenneri	.............(((((((((((..((((((.(((((.....))).)).))))))..)))))))))))..	0.802 -21.40
ppacificus	.(((((((((( (((((((((((((....)))))))))))))))) )))....)))).	0.999 -36.90

celegans	chromosome:X:12692527:12692584:1	Same_strand\|Boundary_coding\|T07C5.1b\|T07C5.1 ## T07C5.1\|protein_coding\|ugt-50\|Putative UDP-glucuronosyltransferase ugt-50 precursor (EC 2.4.1.17) (UDPGT 50). [Source:UniProtKB/Swiss-Prot;Acc:Q22295] ## {SimpF: WRM0629cB08 1 fosmid,WRM065cE04 1 fosmid,yk373g4 1 RNAi,WRM0640cH04 1 fosmid,WRM0626bF03 1 fosmid,WRM0620dC05 1 fosmid,WRM0637dE05 1 fosmid,WRM0621dD06 1 fosmid,WRM0639bE12 1 fosmid,WRM0612dC12 1 fosmid,WRM0610cA02 1 fosmid} ## {MIR: cel-mir-62}
cbriggsae	chromosome:chrX:14261109:14261206:-1	Opposite_strand\|Intronic_coding\|NM_001004313 ## Same_strand\|Boundary_coding\|NM_171786 ## {MIR: cbr-mir-62}
cjaponica	chromosome:chrUn:27040326:27040423:1	Same_strand\|Intronic_coding\|NM_171786
cbrenneri	chromosome:chrUn:45267793:45267890:-1	Opposite_strand\|Intronic_coding\|NM_001107906 ## Same_strand\|Boundary_coding\|NM_077717
ppacificus	chromosome:chrUn:174340299:174340396:-1	intergenic

miR-Intess™

cel-mir-62

block8513 (miRBase cel-mir-62) [miRNAknown_cloningHIGH_shortStem_mirtron_randfoldOK]