cel-mir-789
| absolute | CE1 |
| cel-mir-789 5arm | 10 |
| cel-mir-789 3arm | 18.333 |
| normalized | CE1 |
| cel-mir-789 5arm | 0.007 |
| cel-mir-789 3arm | 0.013 |
sblock41 (miRBase cel-mir-789-1) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-789-1 | 0.001 | no | no | 0.43/0.59 | 21/23/1.00 | 0.0 0.0 | 0.0 0.3 | 3 17 | 0 0 | 1 1 | 0 0 | 16 15 | 4 7 | 5arm 3arm | 1 2 | nd nd | 0.13 0.13 | 1 1 | 22 | 1 | 2 | 2 |
| Member of family novel5 (seed AUUGAUG): cel-mir-789, cel-mir-789 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------------CCCUGCC----------------------------------------------------- | 17 | miR-789a/789b |
| seed | ----------------------------------------AUU-------GAUG----------------------------------------------------------------------------------------------------- | 3 | novel |
| seed | -------------------------------------------------------------------------------------------------CUGCCUG--------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-789 | ----------------------------------------------------------------------------------------------TCCCTGCCTGGGTCACCAA----------TTG-----T----------------------- | 23 | 12 |
| ----------------------------------------------------------------------------------------------TCCCTGCCTGGGTCACCAA----------TTG----------------------------- | 22 | 5 | |
| ---------------------------------------AATT-------GATGACCCAGACAAGG---ACT----------------------------------------------------------------------------------- | 23 | 3 | |
| ------------------------------------------------------------------------------------------------CCTGCCTGGGTCACCAA----------TTG-----T----------------------- | 21 | 2 | |
| celegans | -----------------------TGTCCTGAAGGCAGGCAATT-------GATGACCCAGACAAGG---ACTAATCAAGATT--GTCGATCTAGTCCCTGCCTGGGTCACCAA----------TTG-----TCGGCCCCCGCGGGCA-------- | ||
| cremanei | --------------------------------------CGAAT-------GGTAGCCGAGGAAGGGT--ATCTAGAAAGA------AGGATTA--CCCTGCCTGGGTCACCAT----------TTG----------------------------- | ||
| cbrenneri | ---------------------CTTTTCCTGCA-----ACAGTTTCAGCAGGGTGACCCAGACAACGCTGAGTGATAAAGAG--------------CCCTGCCTGGGTCACCATGCTGCAACTGTTG-----CTGGTCTCAAAG------------ | ||
| cjaponica | GTCAAACGAGGTTAGTGCAACCTTTTCA---------ACAGTT-------GGTGACCCAGGAAGGG---ATTAGAAAAGATTTCACAAGTTCAATCCCTGCCTGGGTCACCAA----------TTGTTGAATTGGTTTCACAAAATGGTCAAGAC | ||
| * * * * ** ** * * * **** ***************** *** | |||
| ----- -------------------- ---------------- ------------- ----------------------------- --- ---------------- ----- | Y51H4A.25a Y51H4A.25 Y51H4A.25 | ||
| celegans | .((((((..(((.((((((( (.((((((((.((.(( (((((((...... ...))).)))))).)).)))))))).))) ))) )).)))..)).)))). | 1.000 -49.10 | |
| cremanei | ((((( (((..((.(((.((((( ((((....... .)))).) )))).))).))..))))) ))) | 1.000 -30.80 | |
| cbrenneri | .....((.((( ((((((.(((((.((((((((((.((..(((...........)) )..)).)))))))))).))))).)))))))) ).))........ | 0.997 -49.20 | |
| cjaponica | ..............(((.((((..(((( (((((( (((((((((((.(((( (((.(((.............)))))))))).))))))))))))) ))))))))..)))).))).............. | 0.856 -60.42 |
| celegans | chromosome:IV:16740652:16740748:-1 | Opposite_strand|Intronic_coding|Y51H4A.25a|Y51H4A.25 ## Opposite_strand|Boundary_non-coding|Y51H4A.25b|Y51H4A.25 ## Y51H4A.25|protein_coding|Y51H4A.25|Y51H4A.25a [Source:RefSeq_peptide;Acc:NP_001023481] ## {SimpF: WRM0633dG08 -1 fosmid,WRM065dA07 -1 fosmid,WRM0637bA03 -1 fosmid,WRM0625aG02 -1 fosmid,WRM0621bE04 -1 fosmid} ## {MIR: cel-mir-789-1} |
| cremanei | chromosome:chrUn:52159843:52159979:-1 | Opposite_strand|Intronic_coding|NM_071305 ## Same_strand|Intronic_coding|NM_071724 |
| cbrenneri | chromosome:chrUn:149438430:149438527:1 | intergenic |
| cjaponica | chromosome:chrUn:75784925:75785050:-1 | Same_strand|Intronic_coding|NM_001047261 |
sblock42 (miRBase cel-mir-789-2) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cel-mir-789-2 | 0.001 | no | no | 0.48/0.59 | 20/23/1.00 | 0.3 0.0 | 1.9 0.3 | 7 17 | 0 0 | 1 1 | 0 0 | 16 15 | 7 8 | 5arm 3arm | 1 2 | nd nd | 0.04 0.04 | 1 1 | 26 | 1 | 2 | 2 |
| Member of family novel5 (seed AUUGAUG): cel-mir-789, cel-mir-789 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------------CCCUGCC------------------------------------------------ | 17 | miR-789a/789b |
| seed | -------------------------------AUUGAUG------------------------------------------------------------------------------------------------------ | 6 | novel |
| seed | ---------------------------------------------------------------------------------------CUGCCUG---------------------------------------------- | 2 | novel |
| seed | ---------------------------------UGAUGAC---------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| cel-miR-789 | ------------------------------------------------------------------------------------TCCCTGCCTGGGTCACCAATTGT--------------------------------- | 23 | 12 |
| ------------------------------------------------------------------------------------TCCCTGCCTGGGTCACCAATTG---------------------------------- | 22 | 5 | |
| --------------------------------------------------------------------------------------CCTGCCTGGGTCACCAATTGT--------------------------------- | 21 | 2 | |
| ------------------------------AATTGATGACT--------CAGGCAGGG-ACT------------------------------------------------------------------------------ | 23 | 2 | |
| ------------------------------AATTGATGACT--------CAGGCAGGG-AC------------------------------------------------------------------------------- | 22 | 2 | |
| ------------------------------AATTGATGACT--------CAGGCAGGG---------------------------------------------------------------------------------- | 20 | 2 | |
| --------------------------------TTGATGACT--------CAGGCAGGG-ACT------------------------------------------------------------------------------ | 21 | 1 | |
| celegans | ------TGTCCTGAAGGCG--------GACAATTGATGACT--------CAGGCAGGG-ACTAATCATGATT--GTCGATTTAGTCCCTGCCTGGGTCACCAATTGTCGGCCCCCGCGGACA------------------ | ||
| cremanei | -----------------------------CGAATGGTAGCC--------GAGGAAGGGTATCTAGAAAG-----AAGGATTA---CCCTGCCTGGGTCACCATTTG---------------------------------- | ||
| cbriggsae | -----------------------------CACGTGGTCATC--------CAGGCGGTGCACGTTAAAAGATATAAATG-------CCCTGCCTGGGTCACCATGTG---------------------------------- | ||
| cbrenneri | ------CTGGTTGACGA----------AACGATTGGTCATC--------CAGGCGGAGCATCTCAGAAGGCTTG-----------CCCTGCCTGGGTCACCAATTGTCTCGGAAAACTAGGTTTTTTTTCAATTTCTTCG | ||
| cjaponica | GTCAAACGAGGTTAGTGCAACCTTTTCAACAGTTGGTGACC--------CAGGAAGGG-ATTAGAAAAGATTTCACAAGTTCAATCCCTGCCTGGGTCACCAATTGTTGAATTGGTTTCACAAAATGGTCAAGAC----- | ||
| ppacificus | ------CGGAATTAGAAGGA-------AAGAAAGGGTAATCTCTCTGGGCCAGCGGGGGAATAATGGGGGCCCGGAAGCCTC---CCCTGCCTGATAGATACTCTGTCTCTCT--------------------------- | ||
| * * * * * * * ********* * ** | |||
| ----- ------------- -------------- --------- ------------- ------------------------------------------------ ----- | T28F3.9 T28F3.9 T28F3.9 | ||
| celegans | .((((((..(((. ((((((((.((((( ((((((((( (((((...((... ..))..))))))))))))))))))).)))))))).)))..)).)))). | 1.000 -62.80 | |
| cremanei | ((((((((..(( .(((.(((((((((...... ..)))).) )))).))).))..)))))))) | 1.000 -30.80 | |
| cbriggsae | ((((((((.((( (((((((.(((..(((.......))).)) ).)))))))))).)))))))) | 1.000 -32.10 | |
| cbrenneri | ((((((..((( .(((((((((.((( (((((((.(((..((....))..)) ).)))))))))).))))))))).)))...)))))).................... | 0.994 -46.50 | |
| cjaponica | ..............(((.((((..((((((((((((((((( ((((.(((( (((.(((.............)))))))))).)))))))))))))))))))))..)))).))).............. | 0.856 -60.42 | |
| ppacificus | ...........((( .(((.(((((.((((.((.(((.(((.(((((.....(((....)))....)))) ).)))))))).))))))))).))).))) | 0.999 -34.20 |
| celegans | chromosome:IV:17309262:17309358:-1 | Opposite_strand|Intronic_coding|T28F3.9|T28F3.9 ## T28F3.9|protein_coding|T28F3.9|T28F3.9 [Source:RefSeq_peptide;Acc:NP_503076] ## {SimpF: WRM0629dG01 -1 fosmid,WRM0612cD04 -1 fosmid,WRM0629bC01 -1 fosmid,WRM066bG02 -1 fosmid,WRM0619aA04 -1 fosmid,WRM0638bF02 -1 fosmid,WRM0638bF01 -1 fosmid} ## {MIR: cel-mir-789-2} |
| cremanei | chromosome:chrUn:52159843:52159979:-1 | Opposite_strand|Intronic_coding|NM_071305 ## Same_strand|Intronic_coding|NM_071724 |
| cbriggsae | chromosome:chrV:3127567:3127703:-1 | Opposite_strand|Intronic_coding|NM_001081076 ## Same_strand|Intronic_coding|NM_074754 ## {MIR: cbr-mir-789b} |
| cbrenneri | chromosome:chrUn:43323640:43323744:1 | intergenic |
| cjaponica | chromosome:chrUn:75784925:75785050:-1 | Same_strand|Intronic_coding|NM_001047261 |
| ppacificus | chromosome:chrUn:140794880:140794976:-1 | Same_strand|Intronic_coding|NM_001107675 |
©2008 InteRNA Genomics B.V.