candidate miRBase miRNAs
miRNAknown_cloningOK_multiarm_DicerNOK_randfoldOK (2 loci)
cbr-mir-230
| absolute | AF16 |
| cbr-mir-230 5arm | 4 |
| cbr-mir-230 3arm | 6 |
| normalized | AF16 |
| cbr-mir-230 5arm | 0.010 |
| cbr-mir-230 3arm | 0.016 |
sblock79 (miRBase cbr-mir-230) [miRNAknown_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-230 | 0.001 | no | no | 0.32/0.50 | 18/23/0.91 | 0.0 0.0 | 0.0 0.0 | 4 5 | 0 0 | 1 1 | 0 0 | 16 18 | 8 8 | 5arm 3arm | 1 1 | nd nd | 0.09 0.10 | 1 1 | 10 | 1 | 1 | -1 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------UAUUAGU----------------------------------------------------------- | 6 | miR-230 |
| seed | ----------------------------------CUUGGUC-------------------------------------------------------------------------------------------------------- | 4 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------------------------------------GTATTAGTTGTGCGACCAGG----------------------------------------------- | 20 | 5 | |
| ---------------------------------ACTTGGTCGACAATTTAATAGT------------------------------------------------------------------------------------------ | 22 | 4 | |
| ------------------------------------------------------------------------------GTATTAGTTGTGCGACCA------------------------------------------------- | 18 | 1 | |
| cbr-miR-230 | ------------------------------------------------------------------------------GTATTAGTTGTGCGACCAGGAAA-------------------------------------------- | 23 | - |
| cbriggsae | -----------------AAAATGCCTTACCGATACTTGGTCGACAATTTAATAGT-ATC--TGATTAATTGATGGATAGTATTAGTTGTGCGACCAGGAAATGGT------------A-TGAGCATTTC---------------- | ||
| cremanei | TCTTTCCCGC-------AAGATGTTGTACCGATACTTGGTCGACAATCTAATATT-ATC--GGTTCTGCCAGAAGATAGTATTAGTTGTGCGACCAGGAGACGGT------------ATTTAACATC------------------ | ||
| celegans | -------------GATGTTGATGTAATGCCGTCACTTGGTCGGCGATTTAATATT-ATCAGAACATAGGAAATTGTTAGTATTAGTTGTGCGACCAGGAGACGGTATTCGCATATTTCTTAAATATT------------------ | ||
| cbrenneri | TCTCTTGGATGAGATTGAAAATGTGGTACCGATACCTGGTCAACAGCATAATATT-ATC--AAATATTGAGAGTGATAGTATTAGTTGTGTGACCAGGAGACGGT--------------TAAACATTGTACTTTCATTAGGGAGG | ||
| cjaponica | -----------------ACAATCAAGTACCGTCACTTGGTCGACGGCTCAATATT-ATCA-CACTTTGTTAATTGTTAGTATTAGTTGTGCGACCAGGAGACGGTA--------------------------------------- | ||
| ppacificus | ------------------------------------------GCGCTGAAATAGTAACCAATATCTCTCTCACGAGAGGTATTAGTTACTATTTCAGAAC--------------------------------------------- | ||
| * **** * * * ********* *** * | |||
| ----- -------------------------------------- --- -------------------------------------------- - ---------- ----- | NM_027552 | ||
| ----- -------------------------------------- --- -------------------------------------------- - ---------- ----- | NM_001019667 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++++++++ + ++++++++++ +++++ | NM_011438 | ||
| cbriggsae | .(((((((.(((((...((((((((((((((.((((.( ((( (.(((....)))))))).)))))))))).))))))))...)))) ) .).)))))). | 1.000 -35.70 | |
| cremanei | .......... ..((((((((((((...((((((((((((.(((((((( ((( ((.....))....))))))))))))))).))))))))...)))) ))..)))))) | 0.994 -40.80 | |
| celegans | ((.....(((((((((((((.((((((((((((.(((((((( (.(((...........))).))))))))))))).)))))))).))))))))).))))...))......... | 0.992 -38.00 | |
| cbrenneri | .((((..(((((((.....(((((...((((...(((((((((((((.((((((( ((( (...........)))))))))))))))).))))))))...)))) ...)))))....)))))))..)))). | 1.000 -51.00 | |
| cjaponica | .........(((((((.((((((((((((((.(((((( (..( ((.((....)).)))))))))))))))).)))))))).))))))) | 0.994 -34.50 | |
| ppacificus | ...(((((((((((((.((((((((((....)))))))))).)))))))))))))... | 1.000 -30.70 |
| cbriggsae | chromosome:chrX:10968458:10968553:1 | Opposite_strand|Intronic_non-coding|NM_027552|Kynu ## Opposite_strand|Intronic_coding|NM_001019667|SPAC17A2.10c ## Same_strand|Intronic_non-coding|NM_011438|Sox12 ## {Repeats: no} ## {MIR: cbr-mir-230} |
| cremanei | chromosome:chrUn:2006531:2006635:-1 | intergenic |
| celegans | chromosome:chrX:5803848:5803960:1 | intergenic ## {MIR: cel-mir-230} |
| cbrenneri | chromosome:chrUn:4059991:4060118:1 | intergenic |
| cjaponica | chromosome:chrUn:38524806:38524892:-1 | intergenic |
| ppacificus | chromosome:chrUn:130999637:130999772:1 | Same_strand|Intronic_coding|NM_124982 |
miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK_nonpairedHIGH (1 loci)
cbr-mir-64
| absolute | AF16 |
| cbr-mir-64 5arm | 207 |
| cbr-mir-64 3arm | 27 |
| normalized | AF16 |
| cbr-mir-64 5arm | 0.540 |
| cbr-mir-64 3arm | 0.070 |
sblock27 (miRBase cbr-mir-64) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-64 | 0.009 | no | no | 0.47/0.62 | 18/24/0.98 | 0.0 0.0 | 0.0 0.0 | 190 25 | 0 0 | 1 1 | 0 0 | 23 24 | 4 5 | 5arm 3arm | 1 1 | nd nd | 0.32 0.38 | 3 3 | 234 | 1 | 1 | 1 |
| Located in cluster 4: cel-mir-65, sblock26_cand, block1267_novel, cbr-mir-64, sblock28_novel |
| Member of family miR-64 (seed AUGACAC): cel-mir-65, cbr-mir-64, sblock28_novel, sblock26_cand |
| reads | miRBase family seed | ||
| seed | ------------------------AUGACAC---------------------------------------------------------------------------------------- | 205 | miR-64 |
| seed | -------------------------------------------------------------------GUUCCGC--------------------------------------------- | 26 | novel |
| seed | ----------------------------CACUGAA------------------------------------------------------------------------------------ | 2 | novel |
| seed | --------------------------------------------------------------------UUCCGCU-------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------CATGACACTGAA--GCGTGTACGG------------------------------------------------------------------------ | 22 | 190 | |
| ------------------------------------------------------------------CGTTCCGCTAGTGTGCCATGC-------------------------------- | 21 | 25 | |
| -----------------------CATGACACTGAA--GCGTGTACG------------------------------------------------------------------------- | 21 | 8 | |
| -----------------------CATGACACTGAA--GCGTGTACGGAT---------------------------------------------------------------------- | 24 | 5 | |
| ---------------------------ACACTGAA--GCGTGTACGGA----------------------------------------------------------------------- | 19 | 2 | |
| -----------------------CATGACACTGAA--GCGTGTA--------------------------------------------------------------------------- | 19 | 1 | |
| ------------------------------------------------------------------CGTTCCGCTAGTGTGCCAT---------------------------------- | 19 | 1 | |
| -------------------------------------------------------------------GTTCCGCTAGTGTGCCATGC-------------------------------- | 20 | 1 | |
| -----------------------CATGACACTGAA--GCGTGT---------------------------------------------------------------------------- | 18 | 1 | |
| cbr-miR-64 | -----------------------CATGACACTGAA--GCGTGTACGGA----------------------------------------------------------------------- | 23 | - |
| cbriggsae | CAAGAATCCTCGGCCTCGCCGACCATGACACTGAA--GCGTGTACGGATGGAAAGTTGAAGCCTTCCGTTCCGCTAGTGTGCCATGCAACGGCGAGTGCCTTG--------GCACTTTG | ||
| celegans | --------GCTGACCTCGCCGAATATGACACTGAA--GCGTT------------ACCGAACCGTTTTCCCACACCTGGATTCGGTGCAACGATCAGTGGCATGCTCGGCTAGCGCCAGT | ||
| cbrenneri | ------------------------ATGACACTGGA--ACGTCTTCGAAAAGACATGTGACATCTTTCGATGCTTCCGGAGTTTT----------------------------------- | ||
| cjaponica | -----------------------CATGACACTGAAA-ACGTTTTCC---GGAAAATTGAAATTTCTGATT---TTCGTATGATG----GTGTTGAG----------------------- | ||
| ppacificus | -----------------------CATGACACCTAACCACAGGCAACGGGGGAGAGGTCCGATGTCCGGTC---TCCGAGTCTTGTGAGGTGACATA----------------------- | ||
| ******* * * * * | |||
| ++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++ | NM_001102902 | ||
| ---------------------------------------- ------------------------------------------------------------------ ------------- | NM_001077612 | ||
| ++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++ | NM_065190 | ||
| ---------------------------------------- ------------------------------------------------------------------ ------------- | NM_001129219 | ||
| cbriggsae | ((((...((..((((((((((..((((.(((...( (((...(((((.((..........)).)))))..))))...))).))))...))))))).)))..) )...)))) | 1.000 -43.70 | |
| celegans | ((((..((.(((((.((((.((((((. .(((( (((((((((............))).)))))))..))).)))))).)))).))))).))...)))) | 0.999 -36.70 | |
| cbrenneri | ..(((.((((( (.((..(((.(((((.........)))))))).)))))))).))).. | 0.638 -14.40 | |
| cjaponica | ...((((((.... (((.....( (((((.......))))))... ..))).....) )))))... | 0.901 -10.90 | |
| ppacificus | .(((.(((((...((((((...((((((...((........))..)) ))))...))))))))))).))). | 1.000 -25.20 |
| cbriggsae | chromosome:chrIII:218903:219011:-1 | Same_strand|Intronic_non-coding|NM_001102902|LOC100124966 ## Opposite_strand|Intronic_coding|NM_001077612|zgc:153009 ## Opposite_strand|Intronic_non-coding|NM_001129219|nhr-121 ## {Repeats: no} ## {MIR: cbr-mir-64} |
| celegans | chromosome:chrIII:2172842:2172938:1 | intergenic ## {MIR: cel-mir-64} |
| cbrenneri | chromosome:chrUn:86493717:86493865:1 | Opposite_strand|Exonic_coding|NM_064349 |
| cjaponica | chromosome:chrUn:64262837:64262985:-1 | intergenic |
| ppacificus | chromosome:chrUn:158296308:158296456:-1 | Same_strand|Intronic_coding|NM_063800 |
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