logoC.briggsae small RNAs

miR-Intess™


Summary
Preprocessing
Mapping
Composition

miR classification
miR expression
Downloads
Table
Thresholds
Families

Clusters
Known and novel clustered miRNAs
clusterIDLocationDistance
cluster 1: 2 miRNAs cbr-mir-235chrI:8823354:8823435:-1
 cel-mir-235chrI:8823486:8823588:-150
 
cluster 2: 3 miRNAs cbr-mir-44chrII:8049267:8049361:-1
 cbr-mir-43chrII:8049417:8049511:-155
 cbr-mir-42chrII:8049572:8049666:-160
 
cluster 3: 8 miRNAs cbr-mir-36chrII:7535762:7535868:1
 cbr-mir-38chrII:7535859:7535973:1-10
 cbr-mir-39chrII:7536042:7536140:168
 cbr-mir-40chrII:7536135:7536250:1-6
 block969_novelchrII:7536263:7536362:112
 cel-mir-35chrII:7536385:7536474:122
 cbr-mir-41chrII:7536494:7536603:119
 cbr-mir-35chrII:7536620:7536731:116
 
cluster 4: 5 miRNAs cel-mir-65chrIII:218506:218602:-1
 sblock26_candchrIII:218656:218750:-153
 block1267_novelchrIII:218778:218894:-127
 cbr-mir-64chrIII:218903:219011:-18
 sblock28_novelchrIII:219144:219242:-1132
 
cluster 5: 2 miRNAs cbr-mir-790-1chrIV:8548022:8548120:-1
 cbr-mir-790-2chrIV:8548664:8548730:-1543
 
cluster 8: 2 miRNAs cbr-mir-250chrV:6755121:6755207:-1
 cbr-mir-61chrV:6755274:6755357:-166
 
cluster 9: 3 miRNAs cbr-mir-74chrX:4493578:4493658:-1
 sblock69_novelchrX:4493687:4493803:-128
 cbr-mir-73chrX:4493863:4493956:-159
 
cluster 10: 6 miRNAs cel-mir-56chrX:16836837:16836952:-1
 cbr-mir-55chrX:16836967:16837078:-114
 block4662_novelchrX:16837100:16837211:-121
 cel-mir-54chrX:16837257:16837374:-145
 block4665_novelchrX:16837432:16837527:-157
 block4666_novelchrX:16837573:16837686:-145
 
cluster 11: 2 miRNAs cbr-mir-240chrX:13573430:13573542:1
 cbr-mir-786chrX:13573558:13573648:115
 
cluster 13: 16 miRNAs cel-mir-35chrX:15333569:15333682:1
 block5113_candchrX:15333737:15333830:154
 cel-mir-35chrX:15333880:15333968:149
 cel-mir-35chrX:15334006:15334122:137
 cel-mir-35chrX:15334766:15334868:1643
 cel-mir-35chrX:15334941:15335040:172
 cel-mir-35chrX:15335080:15335182:139
 cel-mir-35chrX:15335266:15335382:183
 cel-mir-35chrX:15335427:15335519:144
 cel-mir-35chrX:15335590:15335689:170
 cel-mir-35chrX:15335737:15335843:147
 cel-mir-35chrX:15335905:15336004:161
 cel-mir-35chrX:15336052:15336158:147
 cel-mir-35chrX:15336203:15336311:144
 cel-mir-35chrX:15336370:15336473:158
 cel-mir-35chrX:15336518:15336605:144
 
cluster 14: 2 miRNAs block5129_candchrX:15337678:15337783:1
 cel-mir-36chrX:15337746:15337830:1-38
 
Cut-off distance for cluster calculation: 1000 nt.
Candidate clustered miRNAs
clusterIDLocationDistance
cluster 6: 2 miRNAs block2837_candchrIV:14219792:14219911:1
 block2838_candchrIV:14220147:14220263:1235
 
cluster 7: 2 miRNAs block433_candchrI_random:635737:635831:-1
 block434_candchrI_random:636788:636883:-1956
 
cluster 12: 2 miRNAs block5073_candchrX:14750541:14750660:1
 block5080_candchrX:14750925:14751044:1264
 
Cut-off distance for cluster calculation: 1000 nt.
©2008 InteRNA Genomics B.V.