C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

block5129_cand

block5129_cand

Cloning frequencies
absolute	AF16
block5129_cand 5arm	0.467
normalized	AF16
block5129_cand 5arm	0.001

block5129_cand relative cloning frequencies

block5129 [novel_cloningOK_Multihit_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.52/0.52	21/23/1.00	0.0	0.6	7	0	1	0	5	17	5arm	15	nd	0.17	2	7	1	na	na

Clusters
Located in cluster 14: block5129_cand, cel-mir-36

Families
Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-35, cel-mir-35, cel-mir-36, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cbr-mir-39, cbr-mir-35, cbr-mir-36, cbr-mir-40, cbr-mir-41, cbr-mir-38, block969_novel, block5129_cand

block5129 hairpin

		reads	miRBase family seed
seed	------CACCGGG---------------------------------------------------------------------------------------------	7	miR-35/36/38/39/40/41
		len	cloning frequencies
			AF16
	-----TCACCGGGTGAAAACTGGTAG--------------------------------------------------------------------------------	21	5
	-----TCACCGGGTGAAAACTGGTAGAG------------------------------------------------------------------------------	23	2
cbriggsae	gattaTCACCGGGTGAAAACTGGTAGAGgaccttgtagactatcattattatttttcactgttagtctgactcggtcctgcgccactttccaccgcggtgatattc
	**********************************************************************************************************
cbriggsae	((.((((((((((((.(((.((((..((((((..((((((((.((..............)).)))))).))..))))))..)))).))).)))).)))))))).))	1.000 -45.04

cbriggsae

chromosome:chrX:15337678:15337783:1

{Repeats: no}

©2008 InteRNA Genomics B.V.