cbr-mir-38
| absolute | AF16 |
| cbr-mir-38 5arm | 4 |
| cbr-mir-38 3arm | 87 |
| normalized | AF16 |
| cbr-mir-38 5arm | 0.010 |
| cbr-mir-38 3arm | 0.227 |
sblock21 (miRBase cbr-mir-38) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-38 | 0.001 | no | no | 0.50/0.60 | 19/22/0.99 | 0.0 0.0 | 0.0 0.0 | 4 77 | 0 0 | 1 1 | 0 0 | 23 24 | 4 16 | 5arm 3arm | 1 1 | nd nd | 0.09 0.18 | 2 2 | 91 | 1 | 4 | 2 |
| Located in cluster 3: cbr-mir-36, cbr-mir-38, cbr-mir-39, cbr-mir-40, block969_novel, cel-mir-35, cbr-mir-41, cbr-mir-35 |
| Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-35, cel-mir-35, cel-mir-36, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cbr-mir-39, cbr-mir-35, cbr-mir-36, cbr-mir-40, cbr-mir-41, cbr-mir-38, block969_novel, block5129_cand |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------CACCGGG--------------------------------------------- | 86 | miR-35/36/38/39/40/41 |
| seed | ------------------------CCGGGUU-------------------------------------------------------------------------------------------- | 4 | novel |
| seed | ---------------------------------------------------------------------------GGGAGAC----------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-38 | ----------------------------------------------------------------------TCACCGGGAGACAACCTGGTAT------------------------------- | 22 | 77 |
| ----------------------------------------------------------------------TCACCGGGAGACAACCTGGT--------------------------------- | 20 | 8 | |
| -----------------------ACCGGGTTCTCTTTGTG-GTGAT----------------------------------------------------------------------------- | 22 | 4 | |
| --------------------------------------------------------------------------CGGGAGACAACCTGGTATA------------------------------ | 19 | 1 | |
| ----------------------------------------------------------------------TCACCGGGAGACAACCTGGTA-------------------------------- | 21 | 1 | |
| cbriggsae | ATTCATGTGGAGCCTGGACCTGTACCGGGTTCTCTTTGTG-GTGATATGACAACTCATAACCATTCCTTATCACCGGGAGACAACCTGGTATAGGTC-------CAGCGACTCTGCTGGATGG | ||
| celegans | GTTCC----------------------GGTTTTTTCCGTG-GTGATAACGCATCCAAAAG----TCTCTATCACCGGGAGAAAAACTGGAGT------------------------------- | ||
| cbrenneri | TTGCGTAGGGGAACCAAGCT-------AGTTCTTACCGCG-GTGCTACAACAAGCATAAC-----ATCTAACACCGGGTAAAAAC-TAGCTCGGGTCCCCCTTGCAACATTTTCCCTTCCCC- | ||
| ppacificus | GTACCGTACCCACCCCGTCCTGCATCGCGTATCGCCCGTGTGTGCTCGCATAAGAAGTAC----------TCACCGGGAGAAATG-CGATGTAGGCC-------CGTGGCCTACCGTAC---- | ||
| * * ** * * *** * * * ******* * * | |||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_177732 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_214509 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_001030843 | ||
| +++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++ | NM_001101718 | ||
| +++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++ | NM_001011629 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_207243 | ||
| --------------------------------------------- -------------------------------------------------------- ------------------------ | NM_171042 | ||
| cbriggsae | (((((.(..((((((((((((((((((((((((((..((( (((((((((....)))))........)))))))..)))))..)))))))))))))) ))).).)))..)))))).. | 1.000 -58.40 | |
| celegans | .(((( ((((((((((.(( ((((((..((........) )...)))))))))))))))).)))))). | 1.000 -25.60 | |
| cbrenneri | (((((..(((((.((.(((( ((((.(((((.(( (((................ ......)))))))))).))) ))))).)).)))))..)))))............... | 0.969 -43.75 | |
| ppacificus | ((((.(((.((((.....((((((((((((.((.((((((.((((((......)).)))) .))).))).)).))) ))))))))).. .))))..))).)))) | 1.000 -46.70 |
| cbriggsae | chromosome:chrII:7535859:7535973:1 | Opposite_strand|Intronic_non-coding|NM_177732|Slc35d1 ## Opposite_strand|Intronic_coding|NM_214509|COLP1alpha ## Same_strand|Intronic_coding|NM_001101718|LOC100009540 ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## {Repeats: no} ## {MIR: cbr-mir-38} |
| celegans | chromosome:chrII:11537817:11537971:1 | Opposite_strand|Intronic_coding|Y62F5A.9 ## {MIR: cel-mir-38} |
| cbrenneri | chromosome:chrUn:170984328:170984435:-1 | Opposite_strand|Intronic_coding|NM_171042 |
| ppacificus | chromosome:chrUn:118860534:118860634:1 | Same_strand|Intronic_coding|NM_133957 ## {Repeats: (CCCTA)n 5 80 1 class=Simple_repeat} |
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