miR-Intess: block969

block969_novel

Cloning frequencies
absolute	AF16
block969_novel 3arm	202
normalized	AF16
block969_novel 3arm	0.527

block969 [novel_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.50/0.58	18/22/0.97	0.0	0.0	182	0	1	0	18	2	3arm	1	nd	0.15	2	202	1	na	na

Clusters
Located in cluster 3: cbr-mir-36, cbr-mir-38, cbr-mir-39, cbr-mir-40, block969_novel, cel-mir-35, cbr-mir-41, cbr-mir-35

Families
Member of family miR-35/36/38/39/40/41 (seed CACCGGG): cel-mir-35, cel-mir-35, cel-mir-36, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cel-mir-35, cbr-mir-39, cbr-mir-35, cbr-mir-36, cbr-mir-40, cbr-mir-41, cbr-mir-38, block969_novel, block5129_cand

		reads	miRBase family seed
seed	-----------------------------------------------------------------------CACCGGG--------------------------------	199	miR-35/36/38/39/40/41
seed	---------------------------------------------------------------------------GGGUGAG----------------------------	1	novel
seed	----------------------------------------------------------------------UCACCGG---------------------------------	1	novel
seed	------------------------------------------------------------------------ACCGGGU-------------------------------	1	miR-42
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------TCACCGGGTGAGAATCTTCC--------------------	20	182
	----------------------------------------------------------------------TCACCGGGTGAGAATCTTCCAA------------------	22	13
	----------------------------------------------------------------------TCACCGGGTGAGAATCTTC---------------------	19	3
	---------------------------------------------------------------------ATCACCGGGTGAGAATCTTCC--------------------	21	1
	----------------------------------------------------------------------TCACCGGGTGAGAATCTT----------------------	18	1
	-----------------------------------------------------------------------CACCGGGTGAGAATCTTCC--------------------	19	1
	--------------------------------------------------------------------------CGGGTGAGAATCTTCCAA------------------	18	1
cbriggsae	--------GCGGATCTCTCTGGCCTTGGAGGTTTCTCATCGTAGTGATACAAAACCAAAACCATACGATATCACCGGGTGAGAATCTTCCAAGGTAGGAGGATCCTGC--
cremanei	--------------AGTGCTGA----------TGCCGACCTTGGTAATAGGACTAAACTGTGACAAGCTATCACCGGGTGGGCATTGGTTCT------------------
cbrenneri	TTGCGTAGGGGAACCAAGCTAG----------TTCTTACCGCGGTGCTACAACAAGCATAACAT---CTAACACCGGGTAAAAACTAGCTCGGGTC----CCCCTTGCAA
cjaponica	-----------------GCTGG----------TATCCGCGATGGTGTTACA------CTACTGTAATGTATCACCGGGTGGAAACTTGC---------------------
	** * ****** *
	----- ---------------------------------------------------------------------------------------------------- -----	NM_177732
	----- ---------------------------------------------------------------------------------------------------- -----	NM_214509
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_001030843
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_001101718
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_001011629
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_207243
	----- ---------------------------------------------------------------------------------------------------- -----	NM_171042
cbriggsae	(((((((.((((.((((((((((.((((((((...((((((...................))))))..)))))))).)))))))))).))))))))).))	0.990 -46.41
cremanei	((.((..( ((((.(((.((((.((((.................)))).))))))).)))))..)).))	0.988 -25.23
cbrenneri	.((((..(((((.((.(((((( ((.(((((.(((((.................. ....)))))))))).)))))))).)).)) )))..)))).	0.969 -43.35
cjaponica	((.(( (.(((((..(((((.(((( .........)))).))))).))))).))).))	1.000 -20.20

cbriggsae	chromosome:chrII:7536263:7536362:1	Opposite_strand\|Intronic_non-coding\|NM_177732\|Slc35d1 ## Opposite_strand\|Intronic_coding\|NM_214509\|COLP1alpha ## Same_strand\|Intronic_coding\|NM_001101718\|LOC100009540 ## Same_strand\|Intronic_non-coding\|NM_001011629\|Mblk-1 ## {Repeats: no}
cremanei	chromosome:chrUn:26788554:26788693:-1	intergenic ## {SimpF: trf}
cbrenneri	chromosome:chrUn:41613587:41613679:-1	Same_strand\|Intronic_coding\|NM_001056672 ## Opposite_strand\|Intronic_coding\|NM_171042
cjaponica	chromosome:chrUn:117591206:117591345:-1	Opposite_strand\|Intronic_coding\|NM_171042

miR-Intess™

block969_novel

block969 [novel_cloningHIGH_randfoldOK]