logoC.briggsae small RNAs


miR classification

Families
Families of known and novel miRNAs
FamilySizeSeedMembers
miR-35/36/38/39/40/4125 miRNAsCACCGGGcel-mir-35
   cel-mir-35
   cel-mir-36
   cel-mir-35
   cel-mir-35
   cel-mir-35
   cel-mir-35
   cel-mir-35
   cel-mir-35
   cel-mir-35
   cel-mir-35
   cel-mir-35
   cel-mir-35
   cel-mir-35
   cel-mir-35
   cel-mir-35
   cel-mir-35
   cbr-mir-39
   cbr-mir-35
   cbr-mir-36
   cbr-mir-40
   cbr-mir-41
   cbr-mir-38
   block969_novel
   block5129_cand
miR-51/52/557 miRNAsACCCGUAcel-mir-56
   cel-mir-54
   cbr-mir-55
   cbr-mir-52
   cbr-mir-51
   block4665_novel
   block4666_novel
miR-44/45/615 miRNAsGACUAGAcbr-mir-44
   cbr-mir-45-1
   cbr-mir-45-2
   cbr-mir-61
   block4958_cand
miR-73/745 miRNAsGGCAAGAcel-mir-73
   cbr-mir-74
   cbr-mir-73
   sblock19_novel
   sblock69_novel
miR-80/81/824 miRNAsGAGAUCAcel-mir-82
   cbr-mir-81
   cbr-mir-80
   cbr-mir-82
miR-644 miRNAsAUGACACcel-mir-65
   cbr-mir-64
   sblock28_novel
   sblock26_cand
miR-50/62/904 miRNAsGAUAUGUcel-mir-90
   cbr-mir-50
   cbr-mir-90
   cbr-mir-62
miR-241/48/let-7/844 miRNAsGAGGUAGcbr-let-7
   cbr-mir-48
   cbr-mir-241
   cbr-mir-84
miR-239a3 miRNAsUUGUACUcel-mir-238
   cbr-mir-239a
   block2886_novel
lin-43 miRNAsCCCUGAGcel-mir-237
   cbr-lin-4
   sblock71_cand
miR-3572 miRNAsAAAUGCCcbr-mir-357-2
   cbr-mir-357-1
miR-2352 miRNAsAUUGCACcel-mir-235
   cbr-mir-235
miR-2322 miRNAsAAAUGCAcbr-mir-232-2
   cbr-mir-232-1
novel22 miRNAsCUCGGUCblock1486_novel
   block1488_cand
miR-231/7872 miRNAsAAGCUCGcbr-mir-231
   cbr-mir-787
miR-342 miRNAsGGCAGUGcbr-mir-34
   block869_novel
miR-75/792 miRNAsUAAAGCUcbr-mir-75
   cbr-mir-79
miR-422 miRNAsACCGGGUcbr-mir-42
   block5113_cand
miR-46/472 miRNAsGUCAUGGcbr-mir-47
   cbr-mir-46
miR-233/356/872 miRNAsUGAGCAAcbr-mir-233
   cbr-mir-87
miR-432 miRNAsAUCACAGcbr-mir-43
   sblock2_cand
miR-772 miRNAsUCAUCAGcbr-mir-77-1
   cbr-mir-77-2
miR-7882 miRNAsCCGCUUCcbr-mir-788
   sblock19_novel
novel62 miRNAsAUCACAAblock818_novel
   block1069_novel
miR-790/7912 miRNAsUUGGCACcbr-mir-790-1
   cbr-mir-790-2
miR-49/832 miRNAsAGCACCAcbr-mir-83
   cbr-mir-49
miR-35/36/38/39/40/41
cel-mir-35------------------------------------------------------GAAGTTGATAGTCTGGATC--GGACCTGC------GTCAGTTTTTA-TCACTGTGATAT------TCCAAGCAT-----AACGGTTATCACCGGGTGA-AAATTGGTACAGGTC---CGATCC------ATTCGAACGACTTCA-------
cel-mir-35-----------------------------------------------------TAATCTTTGAGGTCCGAGTC--GGACCTGC------CCTGATTCTTG-CTGCAGTGATAT------TTCGAACGG-----CTAGATTATCACCGGGTGA-CAATTAGGACAGGTC---CGACCCCTAGTGACCCGGATTGC-----------
cel-mir-36--------------------------------------------------------------------GACTC--GGTCCTGC------GCCACTTTCCA-CCGCGGTGATAT------TCCAAGCAA-----AACGGTTATCACCGGGTGA-AAATTGGTACAGGTC---CGATCC----------------------------
cel-mir-35------------------------------------------------------------------CCCAGTTCCGGACACTC------GCAGGTTTTTG-CTTCGGTGATAT------TCGAAG--------AGCCGTTATCACCGGGTGA-AAATTTGCAAGTGTC---CGGT--------AACTGG----------------
cel-mir-35------------------------------------------------------------------TTGGATC--GGACCTCT------GCTGGTTTCTG-CCGCAGTGATAT------TCCAACGT------AGTGGTTATCACCGGGTGA-AAACTGGTAGAGGTC---CGATCC------AGA-------------------
cel-mir-35---------------------------------------------------------TCTGATAGTCTGGATC--GAATCTTT------GCTGGTTTCCT-CTGCGGTGATAT------TCCAAATGA-----AGTGCTTATCACCGGGTGA-AAACTGGTAGAGATC---CGATCC------CGTCGGA---------------
cel-mir-35--------------------------------------------------------------TGGTCTGGATC--GGACCTCC------ACCGATTTTTT-CTGCGGTGATAC------TCCAATGG------GACGATTATCACCGGGTGA-AAACTGGTAGAGGTC---CGATCC------AGTCAGACCA------------
cel-mir-35-------------------------------------------------------------ATGGTCTGGGTC--GGACCTTT------GCCAATTTTCT-CCGCGGTGATAC------TCCAATGC------GACGATTATCACCGGGTGA-AAACTGGTAGAGGTC---CGAGCC------AGTCAGACCATC----------
cel-mir-35------------------------------------------------------ATGAAGCGTAGTTTGGGTC--GGACCTCC------GCTGGCTTTTT-CCACGGTGATAC------TCCAAAGCA-----AGTGGTTATCACCGGGTGA-AAACTGGTAGAGGTC---CGATCC------ACTCGGACCACCATCATT----
cel-mir-35----------------------------------------------------------------GACTGGATC--GGACCTCC------GCTGGTTTTTC-CCGCGGTGATAT------TCCGAAGCA-----AGTGGTTATCACCGGGTGA-AAACTGGTAGAGGTC---CGATCC------AGTC------------------
cel-mir-35---------------------------------------------------------------GGTCTGGGTC--GGACCTCC------GCTGTTTTTCT-CCGCGGTGATAC------TCCAAAGAA-----AGTCGTTATCACCGGGTGA-AAACTGGTAGAGGTC---CGATTC------AGTCGGACCA------------
cel-mir-35-----------------------------------------------------------CGAAGGTCTGGATC--GGACCTCC------GCTGGTTTTTC-CCGCGGTGATAT------TCCGAAGCA-----AGTGGTTATCACCGGGTGA-AAACTGGTAGAGGTC---CGATCC------AGTCGTACCATCG---------
cel-mir-35---------------------------------------------------------------GGTCTGGGTC--GGACCTCC------GCTGTTTTTCT-CCGCGGTGATAC------TCCAAAGAA-----AGTCGTTATCACCGGGTGA-AAACTGGTAGAGGTC---CGATTC------AGTCGGACCA------------
cel-mir-35-----------------------------------------------------------CGAAGGTCTGGATC--GGACCTCC------GCTGGTTTTTC-CCGCGGTGATAT------TCCGAAGCA-----AGTGGTTATCACCGGGTGA-AAACTGGTAGAGGTC---CGATCC------AGTCACATCATCG---------
cel-mir-35----------------------------------------------------------CCGAAGGTCTGGGTC--GAGCCTCC------GCTGGTTTTTTACCGCGGTGATAT------TCCAAATAA-----AATGGTTATCACCGGGTGA-AAACTGGTAGAGGTC---CGATCC------AGTCGTACCATCG---------
cel-mir-35------------------------------------------------------------AATGGTCTGGGTC--GGACCTCC------GCTGTTTTTCT-CCGCGGTGATAC------TCCAAAGAA-----AGTCGTTATCACCGGGTGA-AAACTGGTAGAGGTC---CGATTC------AGTCGGACCAT-----------
cel-mir-35------------------------------------------------------------------CTGGGTC--GGACCTCT------GCTGGTATTCT-CTGCGATGATAT------TTTGAAAAA-----AGC--TTATCACCGGGTGA-AAACTGGTAGAGGTC---CGATCC------AGT-------------------
cbr-mir-39-----------------------------------------------------------CAGAGATGCAG-----GGAGCCCA------ACTGGTTCTCA-CTGCAGTGATAA------GCTATGTT------ACAGTCTATCACCGGGTGA-AAAACGGTTAGGCTC-----------------TTTAAGCATCTCTGT-----
cbr-mir-35--------------------------------------------------------------TAGTCCAGTTCT-GGACATTC------GCGGGTTTTTTCCTTCGGTGATAT------TCGAAG--------AATCGCTATCACCGGGTGA-AAACTTGCAAGTGTC---TTGCTT------CGACTGGTCATTTTGCTTGTAT
cbr-mir-36----------------------------------------------------ATTCCAATTGAAACCT---TC--GGACCATT------GTGAATTTTTG-CTGCGGTGTTAC---------AACTAA-----CATCTGTATCACCGGGTGA-AAATTCGCAATGGTC---CGATGGGTATTCATGTGG----------------
cbr-mir-40----------------------------------------------------------------CTCTGTATCCCCTGCCCTCACCCCAGCGGGTTTTCA-TCGCAGTGATATGACGCATTCAAACC------ATTTCTTATCACCGGGTGT-CAATCAGCTAGGGTG---TGGGCG---------CGGGTATCCACAGA-----
cbr-mir-41------------------------------------------------------------TGAAAGCAGGTCCCAAATGCCTT------GGTGGTTTTTCGCCGTAGTGATACAACA--TCGAAGCC------ATACGATATCACCGGGTGAAAAACTCCCA-AGGTC----GGGACATTTTTATTTGT----------------
cbr-mir-38------------------------------------------------------------ATTCATGTGGAGCCTGGACCTGT------ACCGGGTTCTCTTTGTGGTGATAT------GACAACTCATAACCATTCCTTATCACCGGGAGACAACCTGGTATAGGTCCAGCGACTC------TGCTGGATGG------------
block969_novel------------------------------------------------------------------GCGGATC-----TCTCTGGCCTTGGAGGTTTCTCATCGTAGTGATACAAA---ACCAAAACC-----ATACGATATCACCGGGTGA-GAATCTTCCAAGGTAGGAGGATCCTGC-------------------------
block5129_candGATTATCACCGGGTGAAAACTGGTAGAGGACCTTGTAGACTATCATTATTATTTTTCACTGTTAGTCTGACTC--GGTCCTGC------GCCACTTTCCA-CCGCGGTGATAT------TC------------------------------------------------------------------------------------
                                                                                                            ** **                                                                                             

miR-51/52/55
cel-mir-56---TGGAACGGAACATCAGTTTCTGTTCTCAGGGGATCCAGTTCCGGTTGT---GCCTCATCTCAAT---ACCCAG--ATGGCACCCGTATTGCTTCCTCT----------------------GAGAATCGACT----GCGTACCGCATTCAG
cel-mir-54--CAGGACGTCTAAGCCGATCCTTGGC----TGGGAT------ATGAGCAA---ACGTGTACACGAT---ACTTATTCCCTGTACCCGTA-TTCTCATATCTGAGCC----------------AAGGATCGTCGCAAAAGGCGGTGCTTCCTG
cbr-mir-55-----------AAAATTGAATCGTCACAAAGGGGGACTCGGCGGAAAATAT---GGTGGTATACTAC-ACAGTGAATAGATATACCCGTATATTTTTCTGCCGAGCCCCTCCACGACATCAATAAGG--------------------------
cbr-mir-52TTCCCGCTCTGACAGTCCACCCGTACA----TATGTTTCCGTGCTTGACATAGAGCTCAATCACGAT-ACAATGAG--CGGGTAGCCG--------GTCATCGAGTC-----------------GGAA-------------------------
cbr-mir-51-TCCGAAGACGTCCATCTACCCGTAGCTCCTTGCCAT---GTTACTGGTAA---AAGTGAACATGGA---AGTTGGTCCGGGTACATG----------------GCC--------------AGTAGGA-------------------------
block4665_novel---------CGTGAGCCGATCCTTGAC----TGGAAC---TTGGATATCGT---TCGTATACAGCAA---AATAGT--CCTGTACCCGTACTTCCAACTTCCAAATC----------------AAGGATCGTCG----TG-------------
block4666_novel-----AAAGCGCTAGGTGATCCTTGAC----TAGGAT---ATAAAAAGAAC---GTGTGTACATGAATCCAGTGAATACTTGTACCCGTA-TTTTTATATCCGAGCC----------------AAGGATTGCCG-------TTGATCGTTTTC
                        *                                              *            *   *                                     *                           

miR-44/45/61
cbr-mir-44GAGAAGGGCCGATCTGGA-TGTGCTCGTTAGTCATAGACGAATCACACTTGAAAGGTCATATGACTAGAGACACATTCAGCTTGGCCTGGATCTCA---
cbr-mir-45-1----AGTGCCACGCTGGA-TGTGCTCGTTAGTCATAG--TAACCTCATCAATTCAGGCTTATGACTAGAGACACATTCAGCTTGGCGCC----------
cbr-mir-45-2----AGTGCCACGCTGGA-TGTGTTCGTTAGTCATAG--TAACCTCATCAATTCAGGCTTATGACTAGAGACACATTCAGCTTGGCGCC----------
cbr-mir-61TCGGTGTCTCGAGCCGAGTTAAGGCTAATAGTCCTT-----------CCGGTGTATGGTAATGACTAGAA----CCTTGACTCTGCTCGAGTTACTGAG
block4958_cand------CCTCCCTCCGAG-TAGAGT--TCAGACCCTGGTGACCTACAGCAGTAGCATGAGGTGACTAGAG---TGCTGAGCTCTCCTTGGTTCAGAGGC
          *   * *   *         ** *                            ********       *   **   *             

miR-73/74
cel-mir-73--------------CG---TCCCAAAATTCCGATCCGGCTTCCACATCGAGCCTCAGC-----------TAGATCCATAACTTGCTGGCAAGATGTTGGCAGTCGCATTGGATAAAGGAGAC--------------
cbr-mir-74--------------------CGCA------CTTTTGGGCTTCCATATCTTTCC-CAGCTCCTCTCATTTACTATGGA-----TGCTGGCAAGAA-ATGGCAGTCTAGATGTGCA----------------------
cbr-mir-73--------------CGGTCCCTCAAA----CAACCGAGCTTCCCCGTCAAGCCACAGCTATCTCTGACA------------TTGCTGGCAAGATGTTGGCAGTTCAGTTGTATGACGGAGACCA------------
sblock19_novel-----------AGTCCCTCTCTT-------TGTCACCGCTTCCTTCCTTGCGCACACCTAATTCCAGTAGTAAAGGATG------TGGCAAGAC--AGGCAGC---GGTAGATAAGGGAGATTGAGACA-------
sblock69_novelGCTACTATTCAAGCCCCTGCCACA------CTTTTGGACTTCCTTCTCGTTCC-CAGC-----------AAAATGCACAGTTTGCTGGCAAGAC-TAGGCAGTCCAGATGTGTGGCAGCGGCAGTTTTTGGTGAGT
                     *                 *****         * ** *                           ********    *****      *                           

miR-80/81/82
cel-mir-82TGAAATTTTCAATACGTTGGCTTTTTGGCTGGTCTC------ATACCGTTTAGTACTGG-ATATGAGATCATTC--AAGAAGCCCA------AAAAAGAGTTCATTTCA
cbr-mir-81---CGTGATTA--ACGGTCGGTTTTCACCTTGA-TCTG-AGAGCAATAACCAGAATGCTTATCTGAGATCATCG--TGAAAGCTAGTTGTT-------ACTTCACT---
cbr-mir-80TGGACACTCTT--TCGCTCAGCTTTCGACATGATTCTAAACAATACGCTGTCGCAATGTTGT-TGAGATCATTAGTTGAAAGCCGAACGATTCGAGATATCCA------
cbr-mir-82AAGTTCTTCTA--GCGACAGGTTTTCGCCGTGA-TCTGCAGAGTTCCATGAAGAAAAC--ATCTGAGATCATCG--TGAAAGCCAGTTGCTTAAGAGGACTC-------
               **      ***   *  *  **                * *      * *********       ****               *          

miR-64
cel-mir-65---------AGACCCTCACCAATCATGACACTGAAG---CGGGAATGGAAGCGTAGT--------CAGATTGCAATTCCTACCGGGTTCAGTGTCATACTTGGTGCGGATG-AGTCTG
cbr-mir-64CAAGAATCCTCGGCCTCGCCGACCATGACACTGAAG---CGTGTACGGATGGAAAGTTG------AAGCCTTCCGTTCCGCTAGTGTGCCATGCAACGGCGAGTGCCTTGGCACTTTG
sblock28_novel-------GGCTAGACATGCCTGCAATGACACAGAAGAACTGGCAATGAAACCAA-----------TACTACTTATTTCATTACGGTCTGTGTGCCATAGCTGGCGTGTCTCTAGCCA-
sblock26_cand-----------GAACTCACCATCTATGACACT---G---TTTAAATGAAACAGGACTTTCTCTAACACACCG-GGTTCCTGCTCATTTCAGTGTCA---TTGATTGGTTTG-ATTCT-
               *   **    *******    *        * * *                 *        ***             **  *                *     

miR-50/62/90
cel-mir-90AGATCCTGCAGCACCATTTCAAGCGGCCTTCAACGACTATATCAACCGAATCCAAATTCGCGAGTTGATATGTTGTTTTGAATGTCACTTGAGGTTTTTGCTTTTTCGGATTT-------------
cbr-mir-50-----------------TTCCACCCACCGGCCGCTGATATGTC--------TGATATTCTTGGGTTATCTGATAATGATTGTTGTAACTCAAGTATTAGACGTATCGACGGCCGGCTGGGTTGGAA
cbr-mir-90--------CGCACTCATTTCAAGCGGCTTTCAACGACTATATCAACCAAATCAAGCTAGATACGTTGATATGTTGTT-TGAATGCCCCTTGAGATTTTGGAGTGTT--------------------
cbr-mir-62-----------GGCTATTATAAGGTG--------GGTTAGATC--------CCATATCCTTCCGCTTGATGGAAATGAT--ATGTAATCTAGCTTACAGGTCT-----------------------
                  *   *               **  **          *  *      * *         *  *   **                  *                       

miR-241/48/let-7/84
cbr-let-7-----------ACTGGGGTACGGTGAGGTA------------GTAGGTTGTATAGTTTAGAA---------TATTACTCTCGGTGAACTATGCAAGT---------TTCTACCTCACCGAATACCAGG-------
cbr-mir-48----------------AGAACCATTCGGGA-----TGTTGAGGTAGGCTCAGTAGATGCGAGGAGATCCACCATTCCTCACATCGTCTGTCCTAACTCGCCTTCCCTTGTGCTTCA-------------------
cbr-mir-241-------------------ACGGTGTCAAA------GCTGAGGTAGGTGTGAGAAATGACGAAAGGCTC-TTAATCGTTTCATTGT--CTCGCAGCT--GCTTCAACTGTGATTTACCGA---------------
cbr-mir-84TTGCTATATATTCAGCCGTACTGTCTGAAAATAACATCTGAGGTAGTTTG---------------------CAATGCTGTCGACGTAACTGAAAAGTCAACATCATTCCAACTTCCTCGGCTGTTCAAAAGGCTA
                    **  *     *            ****                          * *  *  *   *        *  *                *                     

miR-239a
cel-mir-238-----------TTC--------------TTCTTATCCTCATGAATATGACTGTTTGGGTGTCCTTGGATGTAAAAAGCTATAAATCTGTTAAGATTGCTTTGTACTCCGATGCCATCCACATGGTCTGACGACAAGAAGA-----------------
cbr-mir-239aGAGAATGACGATCCA--AGTTTATGCGATTTTTGTACTACAA-----------TTAGGTA---CTGGACACCAGCAGC---GAGTGTATCCAGA--------------------ATCTATA-----CTAGTACAAAAATAGCTAACAGGATTAAGAT
block2886_novel-----------TCCAATATTTTCGGCAATTTTTGTACTCATG-----------TAAGGT-------GACAAAGATAGC---AAATTTGACCGTATCCACGTCAATTATCATG-CATCTTCA-----TCAGTGCAAGAATGGCC-----TTTTTTGGA
            * *              ** ** * **               *  ***       **       ***    * * *      *                    ***   *       *   *** **                   

lin-4
cel-mir-237----------TCTTGAAAACCATGTTTGGTGGTCCCTGA-----GAATGCTCCGACATCTTCG-------AAGTAGCGTAGCTGTCGAGCACCATTGGGGA----CCAGCGGATTTTTGGTTATAATTTTTTTCAAG
cbr-lin-4ATCAGATGCTTTCGG-----CCTGTTCCCTGAGACCTCAAGTGTGAGCGTTCTGA-AC------------ATGCTTCACGCCTG--GGCTCTC--CGGGTA----CCAGGACGGTCTGAG-----------------
sblock71_cand----GCGGCCTCTCG-----CATGCTGTGTGAGGC--------TGAACGGTATCA-ACCTCAGGTAGCAGAGACCACATGACTGCTAGCTCCC--TGAGTAGCTGCCGTTGAGACTCGAGAAAGCGTGTTGTTGTCG
           *   *     * ** *   **   *         **  * *   * *             *     *    ***        *   * * *    **            *                 

miR-357
cbr-mir-357-2CTACATCAGAAGAGACAGCGAATCCCGGCAATCACCGTGCATTTTCATCTACCAGAGGCACTAATGAAAATGCCAGTCATTGACGGAATTCGTTGAATCTGGAATTAAAGCAT
cbr-mir-357-1CTACATCAGAAGAGACAGCGAATCCCGGCAATCACCGTGCATTTTCATCTACCAGAGGCACTAATGAAAATGCCAGTCATTGACGGAATTCGTTGAATCTGGAATTAAAGCAT
 *****************************************************************************************************************

miR-235
cel-mir-235TCTGAAATCTTGGATCAGGCTCTGGTCATGTGCATATATTGC----GCTAT----ATATGCTAATATTGCACTTGACCATGGCCTCGTCTAGAAAGTAAGACAGTTTCAGA
cbr-mir-235TCC---------GATCCGGCCATGGCCAATTGCATATATTGCTTTTACTTTTTCAAAATGCGAATATTGCACTTT-CCCTGGCCAGATCT-------------------GA
 **          **** ***  *** **  ************     ** *    * **** ************  ** *****   ***                   **

miR-232
cbr-mir-232-2TTCAAGATTTCGGATCTCCGTAGTTTTGACCATTTTATCCAACCTAATAATGTGATAAATGCATCTTAACTGCGGTGATCTGGATTTTGTGAAC
cbr-mir-232-1TTCAAGATTTCGGATCTCCGTAGTTTTGACCATTTTATCCAACCTAATAATGTGATAAATGCATCTTAACTGCGGTGATCTGGATTTTGTGAAC
 **********************************************************************************************

novel2
block1486_novelTCATTCTCACTCGGTCCGGAGTCAATGGGTTATCATTCTCAACCTTCCCATTGGCACCAACTTGCACCGTTGTGTTTTGT
block1488_cand-------CACTCGGTCCGGAGTCAATGGGTTATCATTCTCAACCTTCCCATTGGCACCAACTTG-ACCGTTGTGT-----
        ********************************************************* **********     

miR-231/787
cbr-mir-231CTAGCACCTCAATGT---------------TGTTCTGTCTGTTTCCATAGCTTATATTGTAAGGTACTTATAAGCTCGTGAACAACAGGCAGGACAACTGGAAGTGGTGTTTTTTTTC---------A
cbr-mir-787------CCTCAAAATGGAGAAGAAGGAAACTAGACAATC---TTACATAGCTCA------AAATAATCTGTAAGCTCGT------------------CT-----TAGTTTTCCTCTCCTCTCTAGGGA
       ******  *               *   *  **   ** ******* *      **   *  * *********                  **     * ** **  * * *         *

miR-34
cbr-mir-34AAGCACTCATGGTCGTGAGGCAGTGTGGTTAGCTGGTTGCATACACAGGTTGACAACGGCTACCTTCACTGCCACCC--------------------------------CGAACATGTAGTCCTC----------
block869_novel-------------------------TTCTTCGCCACGTGTCTCCA-ATGCTCTTCACCTCTATTTCCACTTCCACCCAAGTAATTTGAAGTGGCAGTGTAAGTAGCTGGTGAAGAAATTGTTTTGAGACGAAGAG
                          *  ** **    **  * ** * * *    **  ***  * **** ******                                 *** *  * **  *           

miR-75/79
cbr-mir-75TGCGAGACCGAATTGCAGTCGGTTGCAAGCTTCAATACAGACAATGG------------TTCTTGATATTAAAGCTACCAA----CCGCCTTCAAATCGTGCATCGCG
cbr-mir-79-----GAACATTCTCCGATCTTTGGTGA--TTCAGCTTAAATGATAGAATTCAGACGTCTTCATAAAGCT-AGGTTACCAAAGCTCGGCGTTCCAGTT--------CG
      ** *    * *  **  * *  *  ****    * *  ** *            *** * *   * * * ******    * ** *** * *         **

miR-42
cbr-mir-42TAACCCTTGTCGGACCTTTGTGGGTGTTCGCCT--------TTTCGGTGAAGTTACTGAATGCTTCTTCACCGGGTTAACATCTACAGAGGTCCTAAAGGGTT-
block5113_cand-GGCTGGGATCGGACCTCCGCTGGTTTCTGCCGCAGTGATATTCCAACGTAGTGGCTA---------TCACCGGGTGAGAACTGGTAGAGGTCCGATCCAGCCG
    *     ********  *  *** *  ***         ** *   * ***  **          ********* *  *     ******** *    *   

miR-46/47
cbr-mir-47-TAGCTGAGGAAGACTGAAGGGAGCTTTCTTTTGACAGTTCG---ATTTCGAACTCTTACTGTCATGGAGGCGCTCTCTTCAGGTGAACTCTGGCTC
cbr-mir-46AGATACAAGTGAAGCTGAAGAGAGCCGTCTATTGACAGTTCGCTTGTTTCA----TGTGCTGTCATGGAGTCGCTCTCTTCAGATGATCTGAATCTA
   *    **  *  ****** ****  *** ***********    ****       * *********** ************ *** **    ** 

miR-233/356/87
cbr-mir-233AAGCATTTTTCTGTCCCG--CGC---ATCCCTTTGTTCCAATATTCAAACCAGTAGAAAG--ATTATTGAGCAA---TGCGCATGTGCGGGACAGATTGAATAGCTG
cbr-mir-87---GGTTGTGCCCACCCGGCCGCCTGATACTTTCGTCTCAACCTC---GCTGTCAGAATGTCGTAGGTGAGCAAAGTTTCAGGTGTGCCGGA------ACACACCCA
      ** * *   ****  ***   ** * ** **  ***  *     *    **** *   *   *******   * *   ***** ***        * * *  

miR-43
cbr-mir-43AGGCGATTCT---------GCCCGTGACATCAAGATGCTTGTGATTATG---------------------CGAAAATGTTGGGACATATCACAG------TTTACTTGCTGTCGCAGGCGGATTATTGCTA
sblock2_cand-------TCTACAGAGAAAGCCCGTCA----AAGTGGTGTGTG-TTATGCCGCATAAGTGAACTTCTTTTCGGAAGTTTTGGTTCATATCACAGCCAGCTTTGATGTGCTGTCTTGTATAGA---------
        ***         ****** *    ***  *  **** *****                     ** ** * ****  **********      ** *  *******       **         

miR-77
cbr-mir-77-1GAGCTGTGAATTTGGATAGCTGTGCTCTGAGGAAATAACAATAGTCACACCCCATGTCATTTCATCAGGCCATAGCTGTCCAAATTTCTCGGTTCG
cbr-mir-77-2GAGCTGTGAATTTGGATAGCTGTGCTCTGAGGAAATAACAATAGTCACACCCCATGTCATTTCATCAGGCCATAGCTGTCCAAATTTCTCGGTTCG
 ************************************************************************************************

miR-788
cbr-mir-788ACTAACTTTTCCGCTTCTCAATGCTCCAT---TTGCAAAATCAAATTGATTTTC--TTGCAAATGGGATG--AGAACCGGAAACGTTTGA-----------------
sblock19_novel---AGTCCCTCTCTTTGTCACCGCTTCCTTCCTTGCG----CACACCTAATTCCAGTAGTAAAGGATGTGGCAAGACAGGCAGCGGTAGATAAGGGAGATTGAGACA
    *     **   ** ***  *** * *   ****     ** *   * ** *  * * *** *   **  *  ** ** * ** * **                 

novel6
block818_novelCATGAATGGTCAGGTTACCAGTCGACCTGTGCTGCCTCTTTCTTTCGTGATATTTTTCACAGCGTAAAAATATCACAAGAACAGATCCAGCACAGGTCGTTTACCTGACATTTAT
block1069_novelCATGAATGGTCAGGTTACCAGTCGACCTGTGCTGCCTCTTTCTTTCGTGATATTTTTCACAGCGTAAAAATATCACAAGAACAGATCCAGCACAGGTCGTTTACCTGACATTTAT
 *******************************************************************************************************************

miR-790/791
cbr-mir-790-1AAGTCCCTTCCGATTGCTTGGCACTCGCGAACACCGCGATCACTTCCAATATCGATCCGCGGAGTTAGCCAGTGTCAACCAAATGGATGTTTGAGACTT
cbr-mir-790-2-----------GACTGCTTGGCACTCGCGAACACCGCGGTCGA-------AGTTACTCGCGGAGTTAGCCAGTGTCAACCAGATG--------------
            ** ************************ **         *   *  ************************ ***              

miR-49/83
cbr-mir-83---GGCACCACTCGAAAAAACTGAGTTTATGT-GTGTACTTGACGGCG-ATCAGAGCAACGATCTAGCACCATATAAA--TTCAG-----TGTTTTCGTGGACAGAGAGCCA
cbr-mir-49ACCGAAACCATTTGCCATCCGCAGTTTTTTGTAGTGTGCTCCGCGCCATCTTAGTGC-CCGA---AGCACCACGAGAAGCTGCAGATGGAAGTTTTGGTT------------
    *  **** * *  *        *** *** **** **   ** *   * ** **  ***   *******    **  * ***      ***** **             

Families of candidate miRNAs
FamilySizeSeedMembers
novel12 miRNAsAACCCAAblock4517_cand
   block4979_cand
novel32 miRNAsGAAUAAGblock5080_cand
   block5073_cand
novel42 miRNAsACCCUACblock434_cand
   block1560_cand
novel52 miRNAsGCUGUAGblock366_cand
   block367_cand
novel1
block4517_candGGAAAGTTCCTTTCAGCCACTTCGGTTGTGGTTATACAAACAGAAGTTGATATAACCCAATCACGAAAATGGCTGATGGTGATGTCTG
block4979_cand----AGTTCCTTTCAGCCACTTCGGTTGTGGTTATACAAACAGAAGTTGATATAACCCAATCACGAAAATGGCTGATGGTGATG----
     ********************************************************************************    

novel3
block5080_candAATTACTCGGAATAAGTAGTACCATTATGGTACTAATTACTCGGAATAAGTAGTACCAATTCGATACTACTTACTCGGAATAAGTAGTACCAAT--GGTACTACTTACTCGGAATAAGTAGT--------------
block5073_cand--------------AGTAGTACCA--ATGGTACTACTTACTCGGAATAAGTAGTACCAATTCGATACTACTTACTCGGAATAAGTAGTACCAATTCGATACTACTTACTCGGAATAAGTAGTACCAATGGTACTAC
               **********  ********* **********************************************************  * ************************              

novel4
block434_candGAACCTTAAACGGCATGGTACCCTACGTCTGAAGAAAGTACAAATGTGTTCTATTGATACTTTCTCAGCCGACGGGTACCGGACCTATATGGGTTC
block1560_candGAACCTTAAACGGCATGGTACCCTACGTCTGAAGAAAGTACAAATGTGTTCTATTGATACTTTCTCAGCCGACGGGTACCGGACATATATGGGTTC
 ************************************************************************************ ***********

novel5
block366_candTGCATAGCTGGAAAATTTTACAGTTTCAGTGAATCTACAGAATAGTTAGTTTACTGAACATGATAATGCTGTAGGGATTTTATCTAGACTATGTAA
block367_candTGCATAGCTGGAAAATTTTACAGTTTCAGTGAATCTACAGAATAGTTAGTTTACTGAACATGATAATGCTGTAGGGATTTTATCTAGACTATGTAA
 ************************************************************************************************

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