cbr-mir-49
| absolute | AF16 |
| cbr-mir-49 5arm | 3 |
| cbr-mir-49 3arm | 13 |
| normalized | AF16 |
| cbr-mir-49 5arm | 0.008 |
| cbr-mir-49 3arm | 0.034 |
sblock66 (miRBase cbr-mir-49) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-49 | 0.001 | no | no | 0.48/0.58 | 19/24/0.94 | 0.0 0.0 | 0.3 0.0 | 3 11 | 0 0 | 1 1 | 0 0 | 19 15 | 4 7 | 5arm 3arm | 1 1 | nd nd | 0.13 0.05 | 1 1 | 16 | 1 | 2 | 1 |
| Member of family miR-49/83 (seed AGCACCA): cbr-mir-83, cbr-mir-49 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------AGCACCA------------------------------------------------- | 13 | miR-49/83 |
| seed | -------------------------------------GCAG-UUU------------------------------------------------------------------------------------------ | 3 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------------------------------------------AAGCACCACGAGAAGCTGCAG------------------------------------ | 21 | 11 | |
| ------------------------------------CGCAG-TTTTTTGTAGTGTGCTCCG-------------------------------------------------------------------------- | 24 | 2 | |
| cbr-miR-49 | ------------------------------------------------------------------------------AAGCACCACGAGAAGCTGCAGA----------------------------------- | 22 | 1 |
| ------------------------------------CGCAG-TTTTTTGTAGTGTGCTCC--------------------------------------------------------------------------- | 23 | 1 | |
| ------------------------------------------------------------------------------AAGCACCACGAGAAGCTGC-------------------------------------- | 19 | 1 | |
| cbriggsae | ---------------ACCGAAACCAT--TTGCCATCCGCAG-TTTTTTGTAGTGTGCTCCGCGCCATCTTAGTGCCCGAAGCACCACGAGAAGCTGCAGATGGAA-----------------GTTTTGGTT---- | ||
| cremanei | -----------------------------------CCGCAG-TTTCTTATGATGTGCTCCGAGCCAAC-ATGTGTTCGAAGCACCACGAGAAGCTGCAG------------------------------------ | ||
| celegans | ---------------------------ACCACCGTCCGCAG-TTTGTTGTGATGTGCTCCAAGCAATC-ATGAGTCTGAAGCACCACGAGAAGCTGCAGATGGAG-----------------GT----------- | ||
| cbrenneri | ----------TGAGTTTAGAAACAGT--TGGCCGTCCGCGGTTTTTTTGTGTAGTGCTCCGCACCATC-GAGTGTTCGAAGCACCACGAGAAGCTGCAGATGGAG-----------AAGCTTGTTTCCGTTCTTA | ||
| cjaponica | GCAAGGTAAGTTTGCTCCGAAGCCGTCACTTCCATCCGCAGTTTTTTTGTGCTGTGCTCCGAACC--C-GAGTGGTCGAAGCACCACGAGAAGCTGCAGATGGGATGAGAGCGGCGATTTGTGTTTTGTTTTGT- | ||
| **** * *** ** * ******* * * * * ********************** | |||
| +++++ +++++++++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++ +++++ | NM_001027419 | ||
| +++++ +++++++++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++ +++++ | NM_175605 | ||
| ----- ----------- ------------- --------------------------------------------------------------- --------- ----- | NM_181874 | ||
| +++++ +++++++++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++ +++++ | NM_006531 | ||
| ----- ----------- ------------- --------------------------------------------------------------- --------- ----- | NM_001052861 | ||
| +++++ +++++++++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++ +++++ | NM_001110786 | ||
| ----- ----------- ------------- --------------------------------------------------------------- --------- ----- | NM_000844 | ||
| +++++ +++++++++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++ +++++ | NM_001122952 | ||
| +++++ +++++++++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++ +++++ | NM_001122953 | ||
| +++++ +++++++++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++ +++++ | NM_010905 | ||
| cbriggsae | ((((((((... ...(((((.(((( ((((((((.(.(((((.((.(((......).)).)).)))))))))))))))))).))))).. )))))))). | 1.000 -42.90 | |
| cremanei | ..(((( (((((..((..(((((.(((((((.. .)).))))).)))))))..))))))))).. | 1.000 -29.70 | |
| celegans | (((.(((((.(((( (((.(((((..(((((.((.((.... ....)).)).)))))))))).))))))).))))).) )) | 0.999 -36.40 | |
| cbrenneri | ((((....(((((((( (..(((((.((((.(((((((((..(((((.(((((.... ..)))..)).)))))))))))))))))).))))).. .)))).)))))....)))) | 0.998 -40.90 | |
| cjaponica | ((((..((((..(((......(((((((.(((((((.((((.(((((((((..(((((.((.((( . ....))))).)))))))))))))))))).)))))))))...))))).....))).))))..)))) | 0.966 -49.70 |
| cbriggsae | chromosome:chrX:3590186:3590281:-1 | Same_strand|Intronic_non-coding|NM_001027419|F45G2.2 ## Same_strand|Intronic_coding|NM_175605|IFT88 ## Opposite_strand|Intronic_coding|NM_181874|GRM7 ## Opposite_strand|Intronic_non-coding|NM_001052861|Os02g0222100 ## {Repeats: no} ## {MIR: cbr-mir-49} |
| cremanei | chromosome:chrUn:14818085:14818220:-1 | intergenic |
| celegans | chromosome:chrX:9989227:9989304:1 | intergenic ## {MIR: cel-mir-49} |
| cbrenneri | chromosome:chrUn:21067423:21067533:-1 | intergenic |
| cjaponica | chromosome:chrUn:761222:761352:1 | intergenic |
©2008 InteRNA Genomics B.V.