cbr-mir-83
| absolute | AF16 |
| cbr-mir-83 5arm | 6 |
| cbr-mir-83 3arm | 4 |
| normalized | AF16 |
| cbr-mir-83 5arm | 0.016 |
| cbr-mir-83 3arm | 0.010 |
sblock41 (miRBase cbr-mir-83) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-83 | 0.002 | no | no | 0.32/0.36 | 22/22/1.00 | 0.0 0.0 | 0.0 0.0 | 6 4 | 0 0 | 1 1 | 0 0 | 16 19 | 5 9 | 5arm 3arm | 1 1 | nd nd | 0.14 0.09 | 1 1 | 10 | 1 | 1 | 2 |
| Member of family miR-49/83 (seed AGCACCA): cbr-mir-83, cbr-mir-49 |
| reads | miRBase family seed | ||
| seed | ------------------CUGAGUU------------------------------------------------------------------------------ | 6 | novel |
| seed | ---------------------------------------------------------------AGCACCA--------------------------------- | 4 | miR-49/83 |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------ACTGAGTTTATGTGTGTACTT-G--------------------------------------------------------------- | 22 | 6 | |
| cbr-miR-83 | --------------------------------------------------------------TAGCACCATATAAATTCAGTGT------------------- | 22 | 4 |
| cbriggsae | -GGCACCACTCGAAAAAACTGAGTTTATGTGTGTACTT-GACGGCGATC-AGAGCAACGATCTAGCACCATATAAATTCAGTGTTTTCGTGGACAGAGAGCCA | ||
| cremanei | ----------CGGAAAAACTGAGTTTATGTGTGTACTT-GACGGCCACT-CGAGCAACGATCTAGCACCATATAAATTCAGTATTTTCGTGGA--GAGAG--- | ||
| celegans | ---------------CCACTGAATTTATGTGTGTACTT-GACGGCCAACAAGAGCATCGATCTAGCACCATATAAATTCAGTAA------------------- | ||
| cbrenneri | AGGCACCACTCGGAAAAACTGAGTTTATTTGAGTACTTAGACGGCCATT-AGAGCAACGATCTAGCACCATATAAATTCAGTATTTTCGTGGAT-GAGAGCCT | ||
| cjaponica | -GGCACC-CTTGGAAGCACTGAGTTTACGTGTGTGCTT-GACGGCCTTCTCGAGCAACGATCTAGCACCATATAAATTCAGTATTTTCGAGTC--GAGAGCC- | ||
| ***** **** ** ** *** ****** ***** ************************* | |||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001014737 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001014738 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001014739 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_080349 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_167375 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_167376 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_014660 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001076831 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001090075 | ||
| +++++ +++++++++++++++++++++++++++++++++++++ ++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001030400 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001047939 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_024598 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_009930 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_000092 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_000088 | ||
| ----- ------------------------------------- ---------- ---------------------------------------------------------- | NM_001007157 | ||
| +++++ +++++++++++++++++++++++++++++++++++++ ++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001091797 | ||
| +++++ +++++++++++++++++++++++++++++++++++++ ++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_214491 | ||
| cbriggsae | (((.((((..(((((.((((((((((((((.((.((. ((((((.... ...))..)).)).)).)))))))))))))))).))))))))).......))). | 0.970 -32.50 | |
| cremanei | ((((((.((((((((((((((.((.((. ((((((.... ...))..)).)).)).)))))))))))))))).)))))).... ..... | 0.985 -25.90 | |
| celegans | ..((((((((((((((.((.((. ((((((........))..)).)).)).)))))))))))))))).. | 0.971 -20.80 | |
| cbrenneri | ((((..((((((((((.(((((((((((.((.((.((.(((((((.... ...))..)).))))).)))).))))))))))).)))))).)).) )...)))) | 0.995 -28.40 | |
| cjaponica | (((... ((((((((.((((((((((..((.(((((. ((((..(((...)))...)).)).)))))))..)))))))))).)))))))).. ....))) | 0.999 -33.50 |
| cbriggsae | chromosome:chrIV:10882747:10882846:-1 | Opposite_strand|Intronic_coding|NM_001014737|up ## Same_strand|Intronic_non-coding|NM_001030400|cnot4 ## Opposite_strand|Intronic_non-coding|NM_024598|C16orf57 ## Same_strand|Intronic_coding|NM_001091797|kif15-b ## {Repeats: no} ## {MIR: cbr-mir-83} |
| cremanei | chromosome:chrUn:43807341:43807426:-1 | intergenic |
| celegans | chromosome:chrIV:7841594:7841733:1 | intergenic ## {MIR: cel-mir-83} |
| cbrenneri | chromosome:chrUn:124901638:124901738:1 | Same_strand|Intronic_coding|NM_073277 |
| cjaponica | chromosome:chrUn:113084166:113084262:-1 | intergenic |
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