cel-mir-235
| absolute | AF16 |
| cel-mir-235 5arm | 1 |
| cel-mir-235 3arm | 646 |
| normalized | AF16 |
| cel-mir-235 5arm | 0.003 |
| cel-mir-235 3arm | 1.684 |
sblock7 (miRBaseHomolog cel-mir-235) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog cel-mir-235 | 0.001 | no | no | 0.42/0.63 | 18/24/0.98 | 0.0 0.0 | 0.0 0.0 | 1 587 | 0 0 | 1 1 | 0 0 | 16 26 | 4 5 | 5arm 3arm | 1 1 | nd nd | 0.12 0.14 | 1 1 | 647 | 1 | 2 | 0 |
| Located in cluster 1: cbr-mir-235, cel-mir-235 |
| Member of family miR-235 (seed AUUGCAC): cel-mir-235, cbr-mir-235 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------AUUGCAC--------------------------------------- | 626 | miR-235 |
| seed | -----------------------------------------------------------------------------UUGCACU-------------------------------------- | 14 | novel |
| seed | ---------------------------------------------------------------------------UAUUGCA---------------------------------------- | 4 | novel |
| seed | --------------------------------------------------------------------------AUAUUGC----------------------------------------- | 1 | novel |
| seed | --------------------------------------------------------------------------------CACUUGA----------------------------------- | 1 | novel |
| seed | -----------------------GGCUCUG-------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------------------------------------------------TATTGCACTTGACCATGGCCT-------------------------- | 21 | 587 | |
| ---------------------------------------------------------------------------TATTGCACTTGACCATGGCCTCG------------------------ | 23 | 23 | |
| ---------------------------------------------------------------------------TATTGCACTTGACCATGG----------------------------- | 18 | 12 | |
| ----------------------------------------------------------------------------ATTGCACTTGACCATGGCCTCG------------------------ | 22 | 11 | |
| ---------------------------------------------------------------------------TATTGCACTTGACCATGGCC--------------------------- | 20 | 4 | |
| --------------------------------------------------------------------------ATATTGCACTTGACCATGGCC--------------------------- | 21 | 3 | |
| ----------------------------------------------------------------------------ATTGCACTTGACCATGGCC--------------------------- | 19 | 3 | |
| -------------------------------------------------------------------------------GCACTTGACCATGGCCTCG------------------------ | 19 | 1 | |
| --------------------------------------------------------------------------ATATTGCACTTGACCATGGCCT-------------------------- | 22 | 1 | |
| ----------------------AGGCTCTGGTCATGTGCATATATT---------------------------------------------------------------------------- | 24 | 1 | |
| -------------------------------------------------------------------------AATATTGCACTTGACCATGGCCT-------------------------- | 23 | 1 | |
| cbriggsae | TCTGAAATCTT------GGATCAGGCTCTGGTCATGTGCATATATTGCGCT-------ATATATG------CTAATATTGCACTTGACCATGGCCTCGTCTAGAAAGTAAGACAGTTTCAGA | ||
| cremanei | CTTAAA---------------------TAGCTTATGTCTCAAGATC-------------TACAAATTCTTCTAGAAATTGCACTTGAGTTATTTTTC------------------------- | ||
| celegans | CTGAAAATCGTCCGAAGATATCAGGATCAGGCCTTGGCTGATTGCAAAATTGTTCACCGTGAAAAT-----TAAATATTGCACTCTCCC--CGGCCTGATCTGAGAGTAAGGCGA------- | ||
| cbrenneri | ------------------------------GAAATGGGCAAGTACTCGGCA-------ACATGGGGAAGACCACGGATTGCACTTGACTGAAATTTC------------------------- | ||
| cjaponica | ------------------------GTTCAATTAATTCTTCTGCATTGAACTGCCCAAAATGCACG------TTCGCATTGCACTGAGATAATTGAAA------------------------- | ||
| ppacificus | ----------------------AGGTTCG----TTGGGTGTGCACT-------------CGTGTG------CTCGAATTGCACTCTGCCGATGGCCT------------------------- | ||
| * ******** | |||
| ++++++++++++++++ ++++++++++++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001032899 | ||
| ---------------- ---------------------------------- ------- -------------------------------------------------------- | NM_199320 | ||
| ++++++++++++++++ ++++++++++++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_005073 | ||
| cbriggsae | ((((((((.(( ((((.(((((.((((((.(((((.((((((.((. ......) )))))))))))).)))))).))))).))))))...........)))))))) | 0.550 -40.70 | |
| cremanei | ...((( (((((((.((..(((..(( ((.((....)).))))..))).)).))))))))))... | 0.980 -11.00 | |
| celegans | .......(((.((.......(((.(((((((((..((..((.(((((.(((.(((.....)))... ..))).))))).))..)) .))))))))))))......))))) | 0.995 -35.22 | |
| cbrenneri | (((((.(((((((.....((( (..((((.....)).))..))))))))).))...))))) | 0.997 -12.90 | |
| cjaponica | .((((((((.(((...((((.((((((((.......))).) ))))...))))..))).)))))))). | 0.999 -18.90 | |
| ppacificus | (((.((( ((((..(((((.( ((.... ..)))..)))))....)))))))))) | 0.997 -18.60 |
| cbriggsae | chromosome:chrI:8823486:8823588:-1 | Same_strand|Intronic_non-coding|NM_001032899|SLC15A1 ## Opposite_strand|Intronic_non-coding|NM_199320|PHF17 ## {Repeats: no} |
| cremanei | chromosome:chrUn:103171587:103171729:1 | intergenic |
| celegans | chromosome:chrI:6162292:6162399:-1 | intergenic ## {MIR: cel-mir-235} |
| cbrenneri | chromosome:chrUn:112345882:112346024:-1 | Opposite_strand|Boundary_coding|NM_059514 |
| cjaponica | chromosome:chrUn:96983433:96983575:1 | Opposite_strand|Intronic_coding|NM_068550 |
| ppacificus | chromosome:chrUn:156568756:156568898:1 | Same_strand|Intronic_coding|NM_015263 ## Same_strand|Boundary_coding|NM_078030 |
©2008 InteRNA Genomics B.V.