miR-Intess: cbr-let-7

cbr-let-7

Cloning frequencies
absolute	AF16
cbr-let-7 5arm	67
normalized	AF16
cbr-let-7 5arm	0.175

block5206 (miRBase cbr-let-7) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-let-7	0.001	no	no	0.35/0.39	18/23/0.99	0.0	0.0	59	0	1	0	12	4	5arm	1	nd	0.09	1	67	1	na	na

Families
Member of family miR-241/48/let-7/84 (seed GAGGUAG): cbr-let-7, cbr-mir-48, cbr-mir-241, cbr-mir-84

		reads	miRBase family seed
seed	--------------------------------GAGGUAG---------------------------------------------------------------------------------------------------	67	miR-241/48/let-7/84
		len	cloning frequencies
			AF16
cbr-let-7	-------------------------------TGAGGTAGTAGGTTGTATAGTT-------------------------------------------------------------------------------------	22	59
	-------------------------------TGAGGTAGTAGGTTGTATAGTTT------------------------------------------------------------------------------------	23	5
	-------------------------------TGAGGTAGTAGGTTGTATAGT--------------------------------------------------------------------------------------	21	2
	-------------------------------TGAGGTAGTAGGTTGTAT-----------------------------------------------------------------------------------------	18	1
cbriggsae	-------------------ACTGGGGTACGGTGAGGTAGTAGGTTGTATAGTTTAGAATATTACT----------CTCGGTG-AACTATGCAAGTT-TCTACCTCACCGAATACCAGG--------------------
cremanei	AGATGGCGGCCGGTCAACACTGTGCGTCTGGTGAGGTAGTAGGTTGTATAGTTTAGAATCTTACC-----------TTGGTG-AACTATGCAAGTT-TCTACCTCACCAGATACAGAATCTTCTCAGCTGCATCGTCT
celegans	-------------------------------TGAGGTAGTAGGTTGTATAGTTTGGAATATTACC----------ACCGGTG-AACTATGCAATTT-TCTACCTTA--------------------------------
cbrenneri	-------------------------------TGAGGTAGTAGGTTGTATAGTTTAGAATCATATC-----------CCGGTG-AACTATGCAAGCT-TCTACCTCA--------------------------------
ppacificus	-------------------------------TGAGGTAGTAGGTTGTATAGTTCGGAATAATACCAACTGTATCAATTGGTGAAACTGTACAACCTGTCTAGCTTG--------------------------------
cjaponica	-------------------------------AGAGGTAG-ACATTGTTTATTTGAAAGTTCTCCC------------TGATG-AGCTACA-------TCTACTTTA--------------------------------
	******* * ** ** * * * * ** * ** *
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++++ +++++++++++++ +++++++++++++++++++++ +++++	NM_078046
	----- ---------------------------------------------- ------- ------------- --------------------- -----	NM_078045
	----- ---------------------------------------------- ------- ------------- --------------------- -----	NM_001087668
cbriggsae	.((((..(.(((((((((((.((.((((((((((((((.......) ))....) )))))))))).)) .))))))))))).)..)))).	1.000 -41.90
cremanei	((((((((((.((......((((..((((((((((((((.((.(((((((((((...(((..... ..)))) )))))))))).)) .)))))))))))))))))).......)).)))))..)))))	0.965 -53.12
celegans	((((((((.((((((((((((........((((( ...)))) ))))))))))))) .))))))))	1.000 -23.80
cbrenneri	.(((((((.((.((((((((((((.......... ....)) )))))))))).)) .))))))).	1.000 -26.84
ppacificus	.(((.(((((((((((((((((........((((((.((...)).)))))).)))))))))))))).))).))).	0.918 -27.00
cjaponica	.((((((( (....(((((((.((......)).. .)))) ))).... )))))))).	0.968 -12.80

cbriggsae	chromosome:chrX:18407632:18407718:1	Same_strand\|Intronic_non-coding\|NM_078046\|C05G5.1 ## Opposite_strand\|Intronic_non-coding\|NM_078045\|F33C8.4 ## {Repeats: no} ## {MIR: cbr-let-7}
cremanei	chromosome:chrUn:79515416:79515540:-1	Opposite_strand\|Intronic_coding\|NM_003428
celegans	chromosome:chrX:14744082:14744208:-1	intergenic ## {MIR: cel-let-7}
cbrenneri	chromosome:chrUn:8202026:8202152:1	Same_strand\|Intronic_coding\|NM_001003448
ppacificus	chromosome:chrUn:94902677:94902803:1	intergenic
cjaponica	chromosome:chrUn:47230815:47230941:1	intergenic

miR-Intess™

cbr-let-7

block5206 (miRBase cbr-let-7) [miRNAknown_cloningHIGH_randfoldOK]