cbr-mir-48
| absolute | AF16 |
| cbr-mir-48 5arm | 39 |
| cbr-mir-48 3arm | 6 |
| normalized | AF16 |
| cbr-mir-48 5arm | 0.102 |
| cbr-mir-48 3arm | 0.016 |
sblock64 (miRBase cbr-mir-48) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-48 | 0.001 | no | no | 0.52/0.55 | 21/23/1.00 | 0.0 0.0 | 0.0 0.0 | 37 6 | 0 0 | 1 1 | 0 0 | 17 15 | 5 6 | 5arm 3arm | 1 1 | nd nd | 0.27 0.27 | 2 2 | 45 | 1 | 1 | 2 |
| Member of family miR-241/48/let-7/84 (seed GAGGUAG): cbr-let-7, cbr-mir-48, cbr-mir-241, cbr-mir-84 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------GAGGUAG-------------------------------------------------------------------------------------------- | 39 | miR-241/48/let-7/84 |
| seed | --------------------------------------------------------------------------------------------CAUCGUC------------------------------------------ | 6 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------TGAGGTAGGCTCAGTAGATGCG------------------------------------------------------------------------------ | 22 | 37 | |
| -------------------------------------------------------------------------------------------ACATCGTCTGTCCTAACTCGCC---------------------------- | 22 | 6 | |
| -----------------------------------------TGAGGTAGGCTCAGTAGATGC------------------------------------------------------------------------------- | 21 | 2 | |
| cbr-miR-48 | -----------------------------------------TGAGGTAGGCTCAGTAGATGCGA----------------------------------------------------------------------------- | 23 | - |
| cbriggsae | -------------------AGAACCATTCGGG-----ATGTTGAGGTAGGCTCAGTAGATGCGAGGAGA--------TCCACCATTC-CTCACATCGTCTGTCCTAACTCGCCTTCCCTTGTGCTTCA------------- | ||
| cremanei | ------------------------CATACCGG-----ATGTTGAGGTAGGCTCAGTAGATGCGATCAGAGTTGTGCCTCAGGCGTTC-CTCACATCTTCTTGCCTAACTCGCCTTCCTTTATGTTTAACCTTT-------- | ||
| celegans | GGTAAGTCAATTAACCAATTGAAACTCCCGGG-----AACTTGAGGTAGGCTCAGTAGATGCGAATTGAACGGTATC------------TCACATCCACCAGCCTAGCTCGCATTCCCAGAGTTTACGGTATTGTTTTATT | ||
| cbrenneri | -----------------------------------------TGAGGTAGGCTCAGTAGATGCGAACGTAAATGAGCCCACATCGGCCTTTCACATCCACTTGCCTTCCTCG------------------------------ | ||
| cjaponica | ----------------------GCCGCTGGGGTGTCAAAGTTGAGGTAGGTGCGAGAAATG--ACGAGAAT--CATCCAAATCGCGC--TCATTGCCTCCAATCTGCCTCGACTGGGACGCTC------------------ | ||
| ppacificus | -----------------------------------------AGAGGTAGGGGAGAGAG-TGC-AATAGTATTGCATCCTTGCAATACTATTGCAATAGTTCCCCTCTCTCG------------------------------ | ||
| ******** * ** * * ** **** | |||
| ----- ------------- -------------------------------- ---------- ---------------------------------------- ----- | NM_074155 | ||
| ----- ------------- -------------------------------- ---------- ---------------------------------------- ----- | NM_001028773 | ||
| ----- ------------- -------------------------------- ---------- ---------------------------------------- ----- | NM_001027854 | ||
| ----- ------------- -------------------------------- ---------- ---------------------------------------- ----- | NM_074150 | ||
| +++++ +++++++++++++ ++++++++++++++++++++++++++++++++ ++++++++++ ++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001113262 | ||
| ----- ------------- -------------------------------- ---------- ---------------------------------------- ----- | NM_136816 | ||
| +++++ +++++++++++++ ++++++++++++++++++++++++++++++++ ++++++++++ ++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001113262 | ||
| +++++ +++++++++++++ ++++++++++++++++++++++++++++++++ ++++++++++ ++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001113262 | ||
| cbriggsae | .(((.(((..((( (.(.((((.((((..(((..((((.((((((. .......))) ))).))))..))).)))).)))).).))))..))).))). | 1.000 -37.70 | |
| cremanei | ((((..(( (...((((.(((((..((.(((((......(((..(((((...))))).. ))).))))).)).))))).))))...)))..)))).......... | 0.975 -28.30 | |
| celegans | .(((((.((((..(((.....((((((..((( ((..((((.((((((..((.((((.((..((.....)).. )).)))).)).)))))).))))..))))).))))))..))))))).))))). | 0.968 -39.90 | |
| cbrenneri | .((((.((((..(((.((((.(((.((..(((......)))..))..))).)))).))).)))).)))). | 0.950 -24.30 | |
| cjaponica | .......(((((((..((((((((((((((.(((.(((( (((.((.. ........)).)). )))))..))))).))))))))))))..))))))) | 0.972 -39.90 | |
| ppacificus | .(((..(((((((.... ((( ((((((((((((....)))))))))))))))....)))))))..))). | 1.000 -41.40 |
| cbriggsae | chromosome:chrV:12275585:12275679:1 | Opposite_strand|Intronic_non-coding|NM_074155|F47B8.10 ## Opposite_strand|Intronic_coding|NM_001028773|F47B8.14 ## Same_strand|Intronic_coding|NM_001113262|Fib-h ## {Repeats: no} ## {MIR: cbr-mir-48} |
| cremanei | chromosome:chrUn:140422769:140422871:1 | Opposite_strand|Intronic_coding|NM_182407 |
| celegans | chromosome:chrV:14364385:14364508:-1 | intergenic ## {MIR: cel-mir-48} |
| cbrenneri | chromosome:chrUn:191750356:191750490:-1 | intergenic |
| cjaponica | chromosome:chrUn:25919622:25919716:-1 | Same_strand|Intronic_coding|NM_001004193 |
| ppacificus | chromosome:chrUn:127724478:127724612:-1 | intergenic |
©2008 InteRNA Genomics B.V.