cbr-mir-241
| absolute | AF16 |
| cbr-mir-241 5arm | 6 |
| cbr-mir-241 3arm | 2 |
| normalized | AF16 |
| cbr-mir-241 5arm | 0.016 |
| cbr-mir-241 3arm | 0.005 |
sblock63 (miRBase cbr-mir-241) [miRNAknown_cloningOK_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-241 | 0.001 | no | no | 0.43/0.53 | 19/21/0.78 | 0.0 0.0 | 0.0 0.0 | 6 2 | 0 0 | 1 1 | 0 0 | 13 16 | 4 7 | 5arm 3arm | 1 1 | nd nd | 0.05 0.11 | 1 1 | 8 | 1 | 1 | -1 |
| Member of family miR-241/48/let-7/84 (seed GAGGUAG): cbr-let-7, cbr-mir-48, cbr-mir-241, cbr-mir-84 |
| reads | miRBase family seed | ||
| seed | ----------------------------------GAGGUAG----------------------------------------------------------------------------------------------- | 6 | miR-241/48/let-7/84 |
| seed | ----------------------------------------------------------------------------------UUGUCUC----------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------TGAGGTAGGTGTGAGAAATG----------------------------------------------------------------------------------- | 20 | 6 | |
| -----------------------------------------------------------------------------A----TTGTCTCGCAGCTGCTTC------------------------------------ | 19 | 2 | |
| cbr-miR-241 | ---------------------------------TGAGGTAGGTGTGAGAAATGA---------------------------------------------------------------------------------- | 21 | - |
| cbriggsae | --------------------ACGGTGTCAAAGCTGAGGTAGGTGTGAGAAATGACGAAAGGCTCTTAATCGT--TTCA----TTGTCTCGCAGCTGCTTCAACTGTGA-------TTTACCGA------------- | ||
| cremanei | ---------------------------------AGAGGTAGGTGCGAGAAATGACGGAACCTCACAAATCATCGTTCA----TTGTCTCGCAGCTGCTTCA----------------------------------- | ||
| celegans | -----------------GCGGGGGTGTCAAAGTTGAGGTAGGTGCGAGAAATGACGGCATCCATATAGTAATCGTTCA----TTGTCTCTCAGCTGCTTCATCTGTGA-----------------CATGGCTACGC | ||
| cbrenneri | ---------GCAAAAAACAAGGGGTGTCAAAGTAGAGGTAGGTGCGAGAAATGACGGGCATCGTGCAA--ATCGTTCA----TTGTCTCCCAGCTACTTCAACTGTGATTTCAACCCTTTGAATTGACTTTTTTGT | ||
| cjaponica | -----GTGTACGTTGCCGCTGGGGTGTCAAAGTTGAGGTAGGTGCGAGAAATGACGAGAATCATCCAAATCGCGCTCA----TTGCCTCCAATCTGCCTCGACTGGGACG-----CTCGTCGCGCATTTTGTGCAT | ||
| ppacificus | GCGTATTGATTGTCTGGGAGAGAGAGGAAGGGAAGAGGTAGGGCGGAGGAGAGCAGGTAGATCACTAGCCTCCTCCCGGCCTCTTCCTCCCTCCTCCCTCCACTCAGT--------TCGTCAAAGGTCAGCTACGC | ||
| ******** *** * * * * * * *** ** * ** | |||
| ----- ---------------------------------------------------- ---- -------------------------- -------- ----- | NM_074155 | ||
| ----- ---------------------------------------------------- ---- -------------------------- -------- ----- | NM_001028773 | ||
| ----- ---------------------------------------------------- ---- -------------------------- -------- ----- | NM_001027854 | ||
| ----- ---------------------------------------------------- ---- -------------------------- -------- ----- | NM_074150 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++++++++++++++ ++++++++ +++++ | NM_001113262 | ||
| ----- ---------------------------------------------------- ---- -------------------------- -------- ----- | NM_136816 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++++++++++++++ ++++++++ +++++ | NM_001113262 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++ ++++++++++++++++++++++++++ ++++++++ +++++ | NM_001113262 | ||
| cbriggsae | .((((((((.((.((((((((.(((((((((((((((...........))). .))) )).))))))).)))))))).)).))) )..)))). | 1.000 -36.40 | |
| cremanei | .(((((((.(((((((((((((((..............)))).)) )).))))))).))))))). | 1.000 -27.24 | |
| celegans | (((.((((((((.((.((((((((.((.((((((((((((..............)))).)) )).)))).)).)))))))).)).))) )))..)).))) | 1.000 -35.04 | |
| cbrenneri | ((((((((((((((((((((.(((.(((((((.((.(((((((((((.((.....)).. ..))).)) )).)))).)).))))))).))).))))....)))))))).......)))))))) | 0.995 -42.81 | |
| cjaponica | (((((((.((.(((..(((((((..((((((((((((((.(((.(((((((.((..........)).)).))) ))..))))).))))))))))))..)))) )))...)))))...))))))) | 0.986 -52.50 | |
| ppacificus | (((((((((((..(((((.(((.((((.(((((.((((.(((.((((((((.((.(((.....))).)))))))).)).))))))).))))))))).)))..))))). ........)))))).))))) | 0.972 -61.90 |
| cbriggsae | chromosome:chrV:12272731:12272820:1 | Opposite_strand|Intronic_non-coding|NM_074155|F47B8.10 ## Opposite_strand|Intronic_coding|NM_001028773|F47B8.14 ## Same_strand|Intronic_coding|NM_001113262|Fib-h ## {Repeats: no} ## {MIR: cbr-mir-241} |
| cremanei | chromosome:chrUn:140421352:140421481:1 | Opposite_strand|Intronic_coding|NM_182407 |
| celegans | chromosome:chrV:14366165:14366262:-1 | intergenic ## {MIR: cel-mir-241} |
| cbrenneri | chromosome:chrUn:189379036:189379156:1 | intergenic |
| cjaponica | chromosome:chrUn:25919604:25919725:-1 | Same_strand|Intronic_coding|NM_001004193 |
| ppacificus | chromosome:chrUn:105693728:105693855:1 | Opposite_strand|Intronic_coding|NM_001060141 |
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