cbr-mir-51
| absolute | AF16 |
| cbr-mir-51 5arm | 645 |
| cbr-mir-51 3arm | 9 |
| normalized | AF16 |
| cbr-mir-51 5arm | 1.681 |
| cbr-mir-51 3arm | 0.023 |
sblock43 (miRBase cbr-mir-51) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-51 | 0.005 | no | no | 0.50/0.58 | 19/23/0.99 | 0.0 0.0 | 0.0 0.0 | 613 9 | 0 0 | 1 1 | 0 0 | 16 13 | 3 6 | 5arm 3arm | 1 1 | nd nd | 0.17 0.19 | 2 2 | 654 | 1 | 2 | 1 |
| Member of family miR-51/52/55 (seed ACCCGUA): cel-mir-56, cel-mir-54, cbr-mir-55, cbr-mir-52, cbr-mir-51, block4665_novel, block4666_novel |
| reads | miRBase family seed | ||
| seed | -----------------ACCCGUA------------------------------------------------------------------------------------ | 642 | miR-51/52/55 |
| seed | ---------------------------------------------------------------A----UGGAAG---------------------------------- | 9 | novel |
| seed | ---------------------GUAGCUC-------------------------------------------------------------------------------- | 2 | novel |
| seed | ------------------CCCGUAG----------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-51 | ----------------TACCCGTAGCTCCTTGCCATGTT--------------------------------------------------------------------- | 23 | 613 |
| ----------------TACCCGTAGCTCCTTGCCATGT---------------------------------------------------------------------- | 22 | 15 | |
| ----------------TACCCGTAGCTCCTTGCCAT------------------------------------------------------------------------ | 20 | 9 | |
| --------------------------------------------------------------CA----TGGAAGTTGGTCCGGGTAC--------------------- | 21 | 9 | |
| ----------------TACCCGTAGCTCCTTGCCA------------------------------------------------------------------------- | 19 | 5 | |
| --------------------CGTAGCTCCTTGCCATGTT-----A--------------------------------------------------------------- | 20 | 2 | |
| -----------------ACCCGTAGCTCCTTGCCATGTT--------------------------------------------------------------------- | 22 | 1 | |
| cbriggsae | TCCGAAGACGTCCATCTACCCGTAGCTCCTTGCCATGTT-----ACTGGTAAA---AGTGAACA----TGGAAGTTGGTCCGGGTACATGGCCAGTAGGA-------- | ||
| cremanei | ----------------TACCCGTAGCTCCTATCCATGTT-----ACTAGCAGATAGAGTGAACA----TGGAAGTTGGTACAGGTG---------------------- | ||
| celegans | ----------------TACCCGTAGCTCCTATCCATGTT-----ACTGGTCAA-AAAGTGAACA----TGGAAGCAGGTACAGGTG---------------------- | ||
| cbrenneri | ----------------TACCCGTAGCTCCTATCCATGTT-----GTTATCAAA-GAAGTCAACA----TGGAAGTTGGTACTGGTG---------------------- | ||
| cjaponica | ----AAGCCCGCCGTCTACCCGTAGCTCCTATCCATGTTGATAAGTTATCACA--ATGCCAACA----TGGAAGCAGGTACTGGTGTACGGTGTTAGTACGGAGGTTT | ||
| ppacificus | ----------------GACCCGTATTGCGCAGTCTAGAG-----ATTAGTAGT---------CATTTCTGGTTGCAGGATCGGGGG---------------------- | ||
| ******* * * * * ** *** * ** * ** | |||
| ++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++ ++++++++++++++++++++++++++++++++ +++++ | NM_001106790 | ||
| -------------------------------------------- --------- -------- -------------------------------- ----- | NM_001128722 | ||
| -------------------------------------------- --------- -------- -------------------------------- ----- | NM_069625 | ||
| -------------------------------------------- --------- -------- -------------------------------- ----- | NM_069625 | ||
| -------------------------------------------- --------- -------- -------------------------------- ----- | NM_069822 | ||
| -------------------------------------------- --------- -------- -------------------------------- ----- | NM_069822 | ||
| -------------------------------------------- --------- -------- -------------------------------- ----- | NM_171311 | ||
| ++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++ ++++++++++++++++++++++++++++++++ +++++ | NM_025685 | ||
| ++++++++++++++++++++++++++++++++++++++++++++ +++++++++ ++++++++ ++++++++++++++++++++++++++++++++ +++++ | NM_001011629 | ||
| -------------------------------------------- --------- -------- -------------------------------- ----- | NM_135592 | ||
| -------------------------------------------- --------- -------- -------------------------------- ----- | NM_205170 | ||
| -------------------------------------------- --------- -------- -------------------------------- ----- | NM_171312 | ||
| -------------------------------------------- --------- -------- -------------------------------- ----- | NM_000692 | ||
| -------------------------------------------- --------- -------- -------------------------------- ----- | NM_171903 | ||
| cbriggsae | (((....((..((((.((((((..(((.(((.((((((( (((...... ))))).)) ))))))..))).)))))).))))...)).))) | 1.000 -31.20 | |
| cremanei | ((((.((.(((....(((((((( (((.........))))).)) ))))....))))).)))) | 1.000 -16.10 | |
| celegans | ((((.(((.((.((.(((((((( (((...... ..))))).)) )))))).)).))).)))) | 1.000 -22.10 | |
| cbrenneri | ((((.((.(((....(((((((( (........ .....))))) ))))....))))).)))) | 1.000 -16.82 | |
| cjaponica | (((((((((((.((((.(((.((.((.(((((((((............. ....))))) )))))).)).))).)))).))))))..........))))) | 0.926 -33.43 | |
| ppacificus | ..((((.(((..((((.(((((( ((....... .))))))))))))..))))))).. | 1.000 -20.00 |
| cbriggsae | chromosome:chrIV:5734733:5734820:1 | Same_strand|Intronic_coding|NM_001106790|Kif21a ## Opposite_strand|Intronic_non-coding|NM_001128722|LOC565233 ## Opposite_strand|Intronic_coding|NM_069625|ZK596.1 ## Same_strand|Intronic_non-coding|NM_025685|Col27a1 ## {Repeats: no} ## {MIR: cbr-mir-51} |
| cremanei | chromosome:chrUn:62359051:62359178:1 | intergenic |
| celegans | chromosome:chrIV:11025975:11026102:-1 | intergenic ## {MIR: cel-mir-51} |
| cbrenneri | chromosome:chrUn:136914859:136914986:1 | Same_strand|Intronic_coding|NM_031749 |
| cjaponica | chromosome:chrUn:59536097:59536194:-1 | Opposite_strand|Intronic_coding|NM_059487 |
| ppacificus | chromosome:chrUn:12762076:12762203:1 | intergenic |
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