cel-mir-56
| absolute | AF16 |
| cel-mir-56 5arm | 2 |
| cel-mir-56 3arm | 63 |
| normalized | AF16 |
| cel-mir-56 5arm | 0.005 |
| cel-mir-56 3arm | 0.164 |
sblock74 (miRBaseHomolog cel-mir-56) [miRBaseHomolog_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBaseHomolog cel-mir-56 | 0.001 | no | no | 0.45/0.64 | 19/25/0.92 | 0.0 0.0 | 0.0 0.0 | 2 46 | 0 0 | 1 1 | 0 0 | 26 23 | 6 6 | 5arm 3arm | 1 1 | nd nd | 0.28 0.14 | 2 2 | 65 | 1 | 2 | 2 |
| Located in cluster 10: cel-mir-56, cbr-mir-55, block4662_novel, cel-mir-54, block4665_novel, block4666_novel |
| Member of family miR-51/52/55 (seed ACCCGUA): cel-mir-56, cel-mir-54, cbr-mir-55, cbr-mir-52, cbr-mir-51, block4665_novel, block4666_novel |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------ACCCGUA------------------------------------- | 61 | miR-51/52/55 |
| seed | ---------------------------AGGGGAU---------------------------------------------------------------------------------- | 2 | novel |
| seed | ----------------------------------------------------------------------------GUAUUGC--------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------------------CCCGUAU------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------CACCCGTATTGCTTCCTCTGAG----------------------- | 22 | 46 | |
| -----------------------------------------------------------------------CACCCGTATTGCTTCCTCTG------------------------- | 20 | 10 | |
| -----------------------------------------------------------------------CACCCGTATTGCTTCCTCT-------------------------- | 19 | 3 | |
| --------------------------CAGGGGATCCAGTTCCGGTTGTGCC----------------------------------------------------------------- | 25 | 2 | |
| -----------------------------------------------------------------------CACCCGTATTGCTTCCTCTGA------------------------ | 21 | 2 | |
| ------------------------------------------------------------------------ACCCGTATTGCTTCCTCTGA------------------------ | 20 | 1 | |
| ---------------------------------------------------------------------------CGTATTGCTTCCTCTGAGAA--------------------- | 20 | 1 | |
| cbriggsae | TGGAACGGAACATCAGTTTCTGTTCTCAGGGGATCCAGTTCCGGTTGTGCCTCATCTCAATACCCAGATGGCACCCGTATTGCTTCCTCTGAGAATCGACTGCGTACCGCATTCAG | ||
| cremanei | ------------------------CTTGGCGAATCCA-TTCCGGGTGTACCTCACAGCAAT--CCTGACGGTACCCGTAATGCTTCCGCTGAG----------------------- | ||
| celegans | --------GGAGCCAGTGTCTGTTCTTGGCGGATCCATTTTGGGTTGTACCTCATCCTAAA--TTTGACGGTACCCGTAATGTTTCCGCTGAGAACCGACTGTGCACC-------- | ||
| ** * * ***** ** ** *** ***** ** ** ** ******* ** **** ***** | |||
| ------------------------------------------------------------------------------------------------------------------------------ | NM_026450 | ||
| ------------------------------------------------------------------------------------------------------------------------------ | NM_001011629 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_064155 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | NM_001101467 | ||
| ------------------------------------------------------------------------------------------------------------------------------ | NM_205032 | ||
| cbriggsae | ((((.(((.((..(((((...((((((((((((..((((..(((..(((((..((((........)))))))))))).))))..)))))))))))).))))).)).)))..)))). | 0.970 -44.70 | |
| cremanei | ((..(((....(( ((.(((((..(((...(((.... .)))..)))))))).))))....)))..)) | 1.000 -22.00 | |
| celegans | ((.((((..(((.(((((..(((((..((((.(((((...((((((....... ..))).)))))))).))))..)))))..))))).))))).)).)) | 0.999 -43.00 |
| cbriggsae | chromosome:chrX:16836837:16836952:-1 | Opposite_strand|Intronic_non-coding|NM_026450|Zfp169 ## Same_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## {Repeats: no} |
| cremanei | chromosome:chrUn:90883010:90883165:1 | intergenic |
| celegans | chromosome:chrX:13144612:13144709:-1 | intergenic ## {MIR: cel-mir-56} |
©2008 InteRNA Genomics B.V.