C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

block4665_novel

block4665_novel

Cloning frequencies
absolute	AF16
block4665_novel 3arm	370
normalized	AF16
block4665_novel 3arm	0.965

block4665_novel relative cloning frequencies

block4665 [novel_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.44/0.50	18/20/0.98	0.0	0.0	363	0	1	0	18	3	3arm	1	nd	0.25	2	370	1	na	na

Clusters
Located in cluster 10: cel-mir-56, cbr-mir-55, block4662_novel, cel-mir-54, block4665_novel, block4666_novel

Families
Member of family miR-51/52/55 (seed ACCCGUA): cel-mir-56, cel-mir-54, cbr-mir-55, cbr-mir-52, cbr-mir-51, block4665_novel, block4666_novel

block4665 hairpin

		reads	miRBase family seed
seed	------------------------------------------------------------------------------ACCCGUA--------------------------------------------------	370	miR-51/52/55
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------TACCCGTA--CTTCCAACTTCC------------------------------------	20	363
	-----------------------------------------------------------------------------TACCCGTA--CTTCCAACTTC-------------------------------------	19	6
	-----------------------------------------------------------------------------TACCCGTA--CTTCCAACTT--------------------------------------	18	1
cbriggsae	---CGTGA-----GCCGA--------TCCTTGACTGGAACTTGGATATCGTTCG---TATACAGCAAAATAGTCCTGTACCCGTA--CTTCCAACTTCCAAAT--------CAAGGATCGTCGTG----------
cremanei	AATTGTAGATCTCACCGAGTTTTATGTATCTGATCTGAAATGGAATAGC-TTCGAACTGCGGAGCAAAGACACTCTG-ACCCGTAAGCTGCTCAATTTCAGATTAGATACATAGAAATCGGTAAGATATACAATT
	** * * * * * *** * **** * **** * ***** * * ** * **** *
	----- ----- ----- ---------------------------- ---------------------------- ---------------- -------------- -----	NM_026450
	----- ----- ----- ---------------------------- ---------------------------- ---------------- -------------- -----	NM_001011629
	+++++ +++++ +++++ ++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++++ +++++	NM_064155
	+++++ +++++ +++++ ++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++++ +++++	NM_001101467
	----- ----- ----- ---------------------------- ---------------------------- ---------------- -------------- -----	NM_205032
cbriggsae	..... ..((( (((((((.(((((.(((((....((.(( ..(((((..........)))))..)).) ).))))).)))))..) ))))))))).....	1.000 -33.40
cremanei	(((((((.((((.(((((.((((((((((((((((((((((.((.(((( ((((.....(((((........))))) ...)).)))))).)).)))))))))))))))))))))).))))).)))).)))))))	1.000 -61.90

cbriggsae	chromosome:chrX:16837432:16837527:-1	Opposite_strand\|Intronic_non-coding\|NM_026450\|Zfp169 ## Same_strand\|Intronic_non-coding\|NM_064155\|Y17G7B.3 ## {Repeats: no}
cremanei	chromosome:chrUn:118806979:118807111:-1	Opposite_strand\|Intronic_coding\|NM_064591

©2008 InteRNA Genomics B.V.