miR-Intess: block4662

block4662_novel

Cloning frequencies
absolute	AF16
block4662_novel 3arm	206
normalized	AF16
block4662_novel 3arm	0.537

block4662 [novel_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.42/0.50	18/24/0.96	0.0	0.0	133	0	1	0	27	6	3arm	1	nd	0.22	3	206	1	na	na

Clusters
Located in cluster 10: cel-mir-56, cbr-mir-55, block4662_novel, cel-mir-54, block4665_novel, block4666_novel

		reads	miRBase family seed
seed	---------------------------------------------------------------ACCCGUG------------------------------------------	199	novel
seed	-------------------------------------------------------------------GUGAUUC--------------------------------------	5	novel
seed	----------------------------------------------------------------CCCGUGA-----------------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------TACCCGTGATTCCATGTATCGAG---------------------------	23	133
	--------------------------------------------------------------TACCCGTGATTCCATGTATCG-----------------------------	21	31
	--------------------------------------------------------------TACCCGTGATTCCATGTATCGAGT--------------------------	24	30
	------------------------------------------------------------------CGTGATTCCATGTATCGAG---------------------------	19	3
	--------------------------------------------------------------TACCCGTGATTCCATGTAT-------------------------------	19	3
	------------------------------------------------------------------CGTGATTCCATGTATCGA----------------------------	18	2
	---------------------------------------------------------------ACCCGTGATTCCATGTATCGAGT--------------------------	23	1
	--------------------------------------------------------------TACCCGTGATTCCATGTATCGA----------------------------	22	1
	---------------------------------------------------------------ACCCGTGATTCCATGTATCGAG---------------------------	22	1
	--------------------------------------------------------------TACCCGTGATTCCATGTA--------------------------------	18	1
cbriggsae	gagcacgagctgatctttgactcgaacctggacatcgttttgtacacgaagtcaagctgctgTACCCGTGATTCCATGTATCGAGtcaacgatcgcctttaaaaatgtgctt
	****************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------	NM_026450
	--------------------------------------------------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001101467
	--------------------------------------------------------------------------------------------------------------------------	NM_205032
cbriggsae	(((((((((.(((((.(((((((((((.((((.((((....(((((...((.....))..)))))...)))))))).)).))))))))).))))).))).......))))))	0.980 -39.41

cbriggsae

chromosome:chrX:16837100:16837211:-1

Opposite_strand|Intronic_non-coding|NM_026450|Zfp169 ## Same_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## {Repeats: no}

miR-Intess™

block4662_novel

block4662 [novel_cloningHIGH_randfoldOK]