seed | ----------------------------------------------------------------------------------ACCCGUA----------------------------------------------------- | 774 | miR-51/52/55 |
seed | --------------------------------------------------------------------------------------GUAUAUU------------------------------------------------- | 15 | novel |
seed | ---------------------------------------------------------------------------------UACCCGU------------------------------------------------------ | 5 | novel |
seed | -----------------------------------------------------------------------------------CCCGUAU---------------------------------------------------- | 1 | novel |
| | | AF16 |
cbr-miR-55 | ---------------------------------------------------------------------------------TACCCGTATATTTTTCTGCCGAG-------------------------------------- | 23 | 734 |
| ---------------------------------------------------------------------------------TACCCGTATATTTTTCTGCCG---------------------------------------- | 21 | 28 |
| -------------------------------------------------------------------------------------CGTATATTTTTCTGCCGAG-------------------------------------- | 19 | 14 |
| ---------------------------------------------------------------------------------TACCCGTATATTTTTCTGCCGA--------------------------------------- | 22 | 11 |
| --------------------------------------------------------------------------------ATACCCGTATATTTTTCTGCCGAG-------------------------------------- | 24 | 4 |
| --------------------------------------------------------------------------------ATACCCGTATATTTTTCTGCCGA--------------------------------------- | 23 | 1 |
| -------------------------------------------------------------------------------------CGTATATTTTTCTGCCGA--------------------------------------- | 18 | 1 |
| ---------------------------------------------------------------------------------TACCCGTATATTTTTCTGCCGAGC------------------------------------- | 24 | 1 |
| ----------------------------------------------------------------------------------ACCCGTATATTTTTCTGCCGA--------------------------------------- | 21 | 1 |
cbriggsae | ----------AAAATT----GAATCGTCACAAAGGGGGACTCGGCGGAAAATATGGTGGTATACTACACAGTGAATAGATATACCCGTATATTTTTCTGCCGAGCCCCTCCACGACATCAATAAGG---------------- | |
celegans | --------------TGTCTAGATTTGGAACTTAATGGGACTCGGCAGAAACCTATCGGTTATACTTTTT--GGATATGCTATACCCGTATAAGTTTCTGCTGAGCCCCT----TATTCC----------------------- | |
cbrenneri | TAGTATTCCAAGAATTGCCAGGTTTGGTAGTCGCTGGGACTAGGCGGAAGTATAGAGGGTATACTTCAT--CAAGTAACTATACCCGTATATATTTCTGCTTAGCCCCT----GACACCATCTTGGCCTTTCTTGCTATCTA | |
| * * * * * ****** *** *** * ****** * ************ ******* ******* * * | |
| ----- ------ ---------------------------------------------------------------------------------------------------------- ----- | NM_026450 |
| ----- ------ ---------------------------------------------------------------------------------------------------------- ----- | NM_001011629 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_064155 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001101467 |
| ----- ------ ---------------------------------------------------------------------------------------------------------- ----- | NM_205032 |
cbriggsae | ...((( ((.((((......(((((.((((((((((((((((..(((((((((.........))).))))))..)))).)))))))))))))))))..))))..))))).... | 1.000 -41.90 |
celegans | ...........((((..(((.(((.((((((((((((.((((((.((((...... ........)))).))).))).))))))))))))))).) )))))) | 0.930 -33.64 |
cbrenneri | (((.((..((((((..((((((..((((.((((..(((.(((((((((((((((..((((((((((... .)))))....)))))...)))))))))))))))))).) ))))))).))))))..))))))..))))) | 1.000 -61.30 |