cbr-mir-52
| absolute | AF16 |
| cbr-mir-52 5arm | 1408 |
| cbr-mir-52 3arm | 16 |
| normalized | AF16 |
| cbr-mir-52 5arm | 3.670 |
| cbr-mir-52 3arm | 0.042 |
sblock42 (miRBase cbr-mir-52) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-52 | 0.006 | no | no | 0.45/0.55 | 18/25/0.98 | 0.0 0.0 | 0.0 0.0 | 1314 12 | 0 0 | 1 1 | 0 0 | 17 17 | 3 5 | 5arm 3arm | 1 1 | nd nd | 0.25 0.32 | 3 4 | 1424 | 1 | 2 | 2 |
| Member of family miR-51/52/55 (seed ACCCGUA): cel-mir-56, cel-mir-54, cbr-mir-55, cbr-mir-52, cbr-mir-51, block4665_novel, block4666_novel |
| reads | miRBase family seed | ||
| seed | ----------------------------------ACCCGUA--------------------------------------------------------------------------------------------- | 1357 | miR-51/52/55 |
| seed | --------------------------------------GUACAUA----------------------------------------------------------------------------------------- | 42 | novel |
| seed | ---------------------------------------------------------------------------ACGAU-AC--------------------------------------------------- | 14 | novel |
| seed | ---------------------------------CACCCGU---------------------------------------------------------------------------------------------- | 7 | novel |
| seed | -------------------------------------------------------------------------------U-ACAAUG----------------------------------------------- | 2 | novel |
| seed | -----------------------------------CCCGUAC-------------------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-52 | ---------------------------------CACCCGTACATATGTTTCCGTGCT----------------------------------------------------------------------------- | 24 | 1314 |
| -------------------------------------CGTACATATGTTTCCGTGCT----------------------------------------------------------------------------- | 20 | 42 | |
| ---------------------------------CACCCGTACATATGTTTCCGTGCTT---------------------------------------------------------------------------- | 25 | 23 | |
| --------------------------------------------------------------------------CACGAT-ACAATGAGCGGGTAGC------------------------------------- | 22 | 12 | |
| ---------------------------------CACCCGTACATATGTTTCCGTGC------------------------------------------------------------------------------ | 23 | 11 | |
| --------------------------------CCACCCGTACATATGTTTCCGTGCT----------------------------------------------------------------------------- | 25 | 7 | |
| ---------------------------------CACCCGTACATATGTTTCCGTG------------------------------------------------------------------------------- | 22 | 6 | |
| ------------------------------------------------------------------------------AT-ACAATGAGCGGGTAGC------------------------------------- | 18 | 2 | |
| ----------------------------------ACCCGTACATATGTTTCCGTGC------------------------------------------------------------------------------ | 22 | 2 | |
| --------------------------------------------------------------------------CACGAT-ACAATGAGCGGGTAG-------------------------------------- | 21 | 2 | |
| ---------------------------------CACCCGTACATATGTTTCCG--------------------------------------------------------------------------------- | 20 | 1 | |
| ---------------------------------CACCCGTACATATGTTTCCGT-------------------------------------------------------------------------------- | 21 | 1 | |
| ---------------------------------CACCCGTACATATGTTTCC---------------------------------------------------------------------------------- | 19 | 1 | |
| cbriggsae | ----------------TTCCCGCTCTGACAGTCCACCCGTACATATGTTTCCGTGCTTGACATA-GAGCTCAATCACGAT-ACAATGAGCGGGTAGCCGGTCATCG-AGTCGGAA------------------- | ||
| cremanei | ---------------GTACCCTCTACTACCGTCCACCCGTACATATGTTTCCGTGCTTGACATT-GTGCTCAATCACGTT-ACAATATATGGGTCGCCGGTCTT---AGGCGGTTC------------------ | ||
| celegans | ------------------CCGATTCTGACAGTCCACCCGTACATTTGTTTCCGTGCTTGACTTCAAAGCTCAATCACGGC-ACAATATATGGGTCGCCAGTCATTGTAGTCGG--------------------- | ||
| cbrenneri | TATTGGCTAGTATTCTTTTCGGCTCTGACAGTCCACCCGTACATATGTTTCCGTGCTTGACAAT-GAGTTCAATCACGTC-ACAATTTATGGGTCGCCGGTCATTG-AGTTGAACATTTGAACCAGATCTAATA | ||
| cjaponica | ------TATTTCGACGCTCCTCCAACGACAGACCACCCGTACATATGTTTCCGTGCTTGACTCTACGCCTCAATCACGTTAACAATTTATGGTTCGCCGGTCACG--AGTTGAGCTTTTGCGTTTGATG----- | ||
| ppacificus | ---------------------------------TACCCGTACATAT------TCACATTACATTCTGACT--ATCAGAAT-ACAATAGAGGGGGCGG----------AGTG----------------------- | ||
| ********** * * * ** * **** ***** ** * ** | |||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++ +++++++++++++++++++++++++ ++++++++ +++++ | NM_001106790 | ||
| ----- ------------------------------------------------ --------------- ------------------------- -------- ----- | NM_001128722 | ||
| ----- ------------------------------------------------ --------------- ------------------------- -------- ----- | NM_069625 | ||
| ----- ------------------------------------------------ --------------- ------------------------- -------- ----- | NM_069625 | ||
| ----- ------------------------------------------------ --------------- ------------------------- -------- ----- | NM_069822 | ||
| ----- ------------------------------------------------ --------------- ------------------------- -------- ----- | NM_069822 | ||
| ----- ------------------------------------------------ --------------- ------------------------- -------- ----- | NM_171311 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++ +++++++++++++++++++++++++ ++++++++ +++++ | NM_025685 | ||
| +++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++ +++++++++++++++++++++++++ ++++++++ +++++ | NM_001011629 | ||
| ----- ------------------------------------------------ --------------- ------------------------- -------- ----- | NM_135592 | ||
| ----- ------------------------------------------------ --------------- ------------------------- -------- ----- | NM_205170 | ||
| ----- ------------------------------------------------ --------------- ------------------------- -------- ----- | NM_171312 | ||
| ----- ------------------------------------------------ --------------- ------------------------- -------- ----- | NM_000692 | ||
| ----- ------------------------------------------------ --------------- ------------------------- -------- ----- | NM_171903 | ||
| cbriggsae | .(((.((((((((.....((((((.(((.(((...((((.((((.... ....)))).)))).. )))))).)))))).....))))..) ))).))). | 1.000 -33.90 | |
| cremanei | ..(((.((((..((((...(((((((.((.(((...((((.((((.... ....)))).)))).. ))))).)))))))...))))..) ))).))).. | 1.000 -29.10 | |
| celegans | ((((((.((((.....(((((((...((((..(((((.((((((....)).)))).))))). ))))..))))))).....))))....)))))) | 1.000 -30.50 | |
| cbrenneri | ((((((......(((..((((((((((((.....(((((((.((.(((...((((.((((.... ....)))).)))).. ))))).))))))).....))))..) ))))))).....)))......)))))) | 0.838 -31.90 | |
| cjaponica | ....(((((((..((.((((....((((...((..((((((((..((((.((((.........)))).))))..))))...))))...))..))))... .)))))).....))))).)).. | 0.979 -29.10 | |
| ppacificus | (((((((.....( ((..(((..((((((... ..)))))) ..))).)))...)))) .))) | 0.996 -12.20 |
| cbriggsae | chromosome:chrIV:5731131:5731226:1 | Same_strand|Intronic_coding|NM_001106790|Kif21a ## Opposite_strand|Intronic_non-coding|NM_001128722|LOC565233 ## Opposite_strand|Intronic_coding|NM_069625|ZK596.1 ## Same_strand|Intronic_non-coding|NM_025685|Col27a1 ## {Repeats: no} ## {MIR: cbr-mir-52} |
| cremanei | chromosome:chrUn:62355770:62355865:1 | intergenic |
| celegans | chromosome:chrIV:11027568:11027661:-1 | intergenic ## {MIR: cel-mir-53} |
| cbrenneri | chromosome:chrUn:136910867:136910997:1 | intergenic |
| cjaponica | chromosome:chrUn:11282764:11282884:1 | intergenic |
| ppacificus | chromosome:chrUn:53882569:53882704:-1 | Opposite_strand|Intronic_coding|NM_020706 |
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