sblock69_novel
| absolute | AF16 |
| sblock69_novel 5arm | 5 |
| sblock69_novel 3arm | 330 |
| normalized | AF16 |
| sblock69_novel 5arm | 0.013 |
| sblock69_novel 3arm | 0.860 |
sblock69 [novel_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.52/0.59 | 19/23/0.84 | 0.0 0.0 | 0.0 0.0 | 5 275 | 0 0 | 1 1 | 0 0 | 28 29 | 3 5 | 5arm 3arm | 1 1 | nd nd | 0.30 0.29 | 4 3 | 335 | 1 | 2 | 1 |
| Located in cluster 9: cbr-mir-74, sblock69_novel, cbr-mir-73 |
| Member of family miR-73/74 (seed GGCAAGA): cel-mir-73, cbr-mir-74, cbr-mir-73, sblock19_novel, sblock69_novel |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------GGCAAGA------------------------------------------- | 329 | miR-73/74 |
| seed | -------------------------------------GGACUUC------------------------------------------------------------------------------------ | 5 | novel |
| seed | -----------------------------------------------------------------------------UGGCAAG-------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------TGGCAAGACTA-GGCAGTCCAG----------------------------- | 21 | 275 | |
| -----------------------------------------------------------------------------TGGCAAGACTA-GGCAGTCC------------------------------- | 19 | 53 | |
| ------------------------------------TGGACTTCCTTCTCGTTCCCAGC--------------------------------------------------------------------- | 23 | 5 | |
| ----------------------------------------------------------------------------CTGGCAAGACTA-GGCAGTCCAG----------------------------- | 22 | 1 | |
| -----------------------------------------------------------------------------TGGCAAGACTA-GGCAGTCCAGAT--------------------------- | 23 | 1 | |
| cbriggsae | GCTACTATTCAAGCCCCTG--------CCACACTTTTGGACTTCCTTCTCGTTCCCAGC--AAAATGCACAGTTTGCTGGCAAGACTA-GGCAGTCCAGATGTGTGGCAGCGGCAGTTTTTGGTGAGT | ||
| cremanei | ---GTGACCGAAGACGCTGGAAAAGGTCGACACGTTTGGACTTCCGTCTCTTTCCCAGCTGATATTGGATAGCATGCTGGCAAGAA-ATGGCAGTCCAGATGTGTACACCTTCAAGCTCTTGTCAT-- | ||
| cbrenneri | -----------------------------------TTGGGCTTCCAAGTC-TACCCAGC---ACTTAAAAAAGTGGCTGGCAAGACTATGGCAGTCCAC----------------------------- | ||
| cjaponica | ---------AAGGCCACTG-----------CACGTTTGGGCTTCCTTCTCCTTCCCAGC---AACCCTCAATTTTGCTGGCAAGACTA-GGCAGTCTACACGTGCAGTGGTCTT-------------- | ||
| **** ***** ** * ****** * ********** * ******* * | |||
| ------------------------ -------------------------------- --------------------------- -------------------------------------------- | NM_001087279 | ||
| ------------------------ -------------------------------- --------------------------- -------------------------------------------- | NM_072843 | ||
| ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ | NM_001109816 | ||
| ------------------------ -------------------------------- --------------------------- -------------------------------------------- | NM_065440 | ||
| ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ | NM_020367 | ||
| cbriggsae | (((((((.....(((.((( ((((((.((((((((.(((..((....((((( (((........))))))))...))..) )).)))))))).))))))))).)))......)))).))) | 1.000 -55.40 | |
| cremanei | (((((..((((.(((....(((((..(((((((((((((.((((.((((..(((((((.(((...))).)).))))).)))). )))).)))))))))))))..)))))..)))))))))))) | 1.000 -51.70 | |
| cbrenneri | .((((((.((((((( (..((((( ((((....))))).))))..))))).))).)))))). | 1.000 -28.70 | |
| cjaponica | (((((((((( (((((.((((((.(((....(((.((((( ((.........))))))).)))...) )).)))))).))))))))))))))) | 1.000 -49.30 |
| cbriggsae | chromosome:chrX:4493687:4493803:-1 | Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_coding|NM_001109816|MHC ## Same_strand|Intronic_non-coding|NM_020367|PARP11 ## {Repeats: no} |
| cremanei | chromosome:chrUn:103837391:103837512:-1 | intergenic |
| cbrenneri | chromosome:chrUn:1030240:1030397:-1 | intergenic |
| cjaponica | chromosome:chrUn:6831718:6831807:1 | intergenic |
©2008 InteRNA Genomics B.V.