cbr-mir-73
| absolute | AF16 |
| cbr-mir-73 5arm | 1 |
| cbr-mir-73 3arm | 128 |
| normalized | AF16 |
| cbr-mir-73 5arm | 0.003 |
| cbr-mir-73 3arm | 0.334 |
sblock70 (miRBase cbr-mir-73) [miRNAknown_cloningHIGH_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-73 | 0.002 | no | no | 0.42/0.64 | 19/25/0.97 | 0.0 0.0 | 0.0 0.0 | 1 119 | 0 0 | 1 1 | 0 0 | 16 16 | -1 2 | 5arm_loop 3arm | 1 1 | nd nd | 0.32 0.26 | 2 2 | 129 | 1 | 5 | 2 |
| Located in cluster 9: cbr-mir-74, sblock69_novel, cbr-mir-73 |
| Member of family miR-73/74 (seed GGCAAGA): cel-mir-73, cbr-mir-74, cbr-mir-73, sblock19_novel, sblock69_novel |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------GGCAAGA----------------------------------------------- | 126 | miR-73/74 |
| seed | ----------------------------------------------------------------------------------AGAUGUU------------------------------------------- | 2 | novel |
| seed | ------------------------------GAGCUUC----------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-73 | -----------------------------------------------------------------------------TGGCAAGATGTTGGCAGTTCAGT-------------------------------- | 23 | 119 |
| -----------------------------------------------------------------------------TGGCAAGATGTTGGCAGTTCAGTT------------------------------- | 24 | 4 | |
| ---------------------------------------------------------------------------------AAGATGTTGGCAGTTCAGT-------------------------------- | 19 | 2 | |
| -----------------------------------------------------------------------------TGGCAAGATGTTGGCAGTTC----------------------------------- | 20 | 1 | |
| -----------------------------------------------------------------------------TGGCAAGATGTTGGCAGTTCAG--------------------------------- | 22 | 1 | |
| -----------------------------------------------------------------------------TGGCAAGATGTTGGCAGTT------------------------------------ | 19 | 1 | |
| -----------------------------CGAGCTTCCCCGTCAAGCCACAGCT------------------------------------------------------------------------------ | 25 | 1 | |
| cbriggsae | -------------CGGTCCCTCAAACAACCGAGCTTCCCCGTCAAGCCACAGCT------ATC---TCTGACATTGCTGGCAAGATGTTGGCAGTTCAGTTGTATG---ACGGAGACCA------------- | ||
| cremanei | ------CAGCGAGAGGTCCCTCAAACGACTGAGCTTCCACGTCAAGCCTCAGCT------ATCGAATGAAAAATTGCTGGCAAGATGTAGGCAGTTCAGTTGTATG----CGGAGACCAATTTCCTG----- | ||
| celegans | TTATTCCAGTGAG-AGTCCCACACACGACTGGACTTCCATATCGAGCCACAGCT------ATC---AACGAATTTGCTGGCAAGATGTAGGCAGTTCAGTTGTGCGTTTATGGAGACCAACATCCGGATTAA | ||
| cbrenneri | --------------GGTCCTTAATACGACTGAGCTTCCACATCAGACCACAGCT------ATTCACAAAAAAAATGCTGGCAAGATGTAGGCAGTTCAGTTGTATG----CGGTGACC-------------- | ||
| cjaponica | ------GTGTGAGCGGTCCATCGAGCGACCGAACTTCCATATCGAGCC-CAGCCCACTCGACC---AAATAAGACGCTGGCAAGATGTTGGCAGTTCAGTCGCAAG---ATTGTGACCAATACTTGCTCCAC | ||
| **** * ** * ***** ** ** **** * * ************* *********** * * * **** | |||
| ----- ----------------------------------------- --- ---------------------------------------- ---------- ----- | NM_001087279 | ||
| ----- ----------------------------------------- --- ---------------------------------------- ---------- ----- | NM_072843 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++++ ++++++++++ +++++ | NM_001109816 | ||
| ----- ----------------------------------------- --- ---------------------------------------- ---------- ----- | NM_065440 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++++ ++++++++++ +++++ | NM_020367 | ||
| cbriggsae | .(((((((((.(((((.(((((.((.((((..((((..((. ... .........))))))..))))..)).))))).))))).)) ).)).)))). | 1.000 -36.42 | |
| cremanei | (((.((((((((((.((.(((((((((((.(((((((..(((..(((. ...............))))))..))))).)).))))))))))).)) .)).))))..))))))) | 0.999 -45.19 | |
| celegans | .((.(((.(((.. .(((((((.((((((((((((.(((((((..(((..(((. ... .........))))))..))))).)).)))))))))))).))....)).)))...)))..))).)). | 0.990 -41.92 | |
| cbrenneri | ((((((..(((((((((((((.(((((((......((((. ...............))))....))))).)).))))))))))))). .)).)))) | 1.000 -36.59 | |
| cjaponica | (((.((((((((((((..(((((.(((((.(((((((..((. ((((....((.... ......)).))))))..))))).)).))))).)))))..) ).)).)))).......))))))) | 0.997 -44.31 |
| cbriggsae | chromosome:chrX:4493863:4493956:-1 | Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_coding|NM_001109816|MHC ## Same_strand|Intronic_non-coding|NM_020367|PARP11 ## {Repeats: no} ## {MIR: cbr-mir-73} |
| cremanei | chromosome:chrUn:103837693:103837803:-1 | intergenic |
| celegans | chromosome:chrX:2368753:2368874:1 | intergenic ## {MIR: cel-mir-73} |
| cbrenneri | chromosome:chrUn:1030699:1030792:-1 | intergenic |
| cjaponica | chromosome:chrUn:6831545:6831663:1 | intergenic |
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