logoC.briggsae small RNAs


miR expression

cel-mir-73

cel-mir-73

Cloning frequencies
absoluteAF16
cel-mir-73 3arm104
normalizedAF16
cel-mir-73 3arm0.271
cel-mir-73 relative cloning frequencies

block571 (miRBaseHomolog cel-mir-73) [miRBaseHomolog_cloningHIGH_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBaseHomolog cel-mir-730.002nono0.47/0.5919/23/0.970.0
0.6
100
0
1
0
14
5
3arm
1
nd
0.22
2
1041nana
Families
Member of family miR-73/74 (seed GGCAAGA): cel-mir-73, cbr-mir-74, cbr-mir-73, sblock19_novel, sblock69_novel
block571 hairpin
  readsmiRBase family seed
seed     --------------------------------------------------------------------------------GGCAAGA-----------------------------------------------     100miR-73/74
seed     ------------------------------------------------------------------------------------AGAUGUU-------------------------------------------     3novel
seed     -------------------------------------------------------------------------------UGGCAAG------------------------------------------------     1novel
  lencloning frequencies
   AF16
      -------------------------------------------------------------------------------TGGCAAGATGTTGGCAGTCGCAT--------------------------------     2369
      -------------------------------------------------------------------------------TGGCAAGATGTTGGCAGTCGC----------------------------------     2131
      -----------------------------------------------------------------------------------AAGATGTTGGCAGTCGCAT--------------------------------     193
      ------------------------------------------------------------------------------CTGGCAAGATGTTGGCAGTCGC----------------------------------     221
cbriggsae     --------------CGTCCCAAAATTCCGATCCGGCTTCCACATCGAGCCTCAGCT------A--GATCCATAACTTGCTGGCAAGATGTTGGCAGTCGCATTGGATA---AAGGAGAC---------------      
cremanei     ------CAGCGAGAGGTCCCTCAA--ACGACTGAGCTTCCACGTCAAGCCTCAGCT------ATCGAATGAAAAATTGCTGGCAAGATGTAGGCAGTTCAGTTGTATG----CGGAGACCAATTTCCTG-----      
celegans     TTATTCCAGTGAG-AGTCCCACAC--ACGACTGGACTTCCATATCGAGCCACAGCT------ATCAA---CGAATTTGCTGGCAAGATGTAGGCAGTTCAGTTGTGCGTTTATGGAGACCAACATCCGGATTAA      
cbrenneri     --------------------------GCGATTGGGCTTCCAAGTCTA--CCCAGCA------CTTAA---AAAAGTGGCTGGCAAGACTATGGCAGTCCACTTGC-----------------------------      
cjaponica     ------GTGTGAGCGGTCCATCGA--GCGACCGAACTTCCATATCGAGCC-CAGCCCACTCGACCAA---ATAAGACGCTGGCAAGATGTTGGCAGTTCAGTCGCAAG---ATTGTGACCAATACTTGCTCCAC      
                                 ***     ******  ** *  * ****           *     **   **********    ******    * *                                    
 +++++              ++++++++++++++++++++++++++++++++++++++++++      +  +++++++++++++++++++++++++++++++++++++++++++   ++++++++               +++++NM_059625
cbriggsae                   .(((((.....((((((.(((((.(((((((..(((..(((.      (  (........)).))))))..))))).)).))))).))))))..   ..)).)))                    1.000 -35.10
cremanei           (((.((((((((((.((.  (((((((((((.(((((((..(((..(((.      ...............))))))..))))).)).))))))))))).))    .)).))))..)))))))          0.999 -45.19
celegans     .((.(((.(((.. .(((((((.(  (((((((((((.(((((((..(((..(((.      .....   .......))))))..))))).)).)))))))))))).))....)).)))...)))..))).)).     0.990 -41.92
cbrenneri                               ((((.((((((.((((((((.  .((((((      (((..   ..))))).))))..))))).))).)))))).))))                                  1.000 -32.90
cjaponica           (((.((((((((((((..  (((((.(((((.(((((((..((. ((((....((......   ....)).))))))..))))).)).))))).)))))..)   ).)).)))).......)))))))     0.997 -44.31

cbriggsaechromosome:chrI_random:3307356:3307449:1Same_strand|Intronic_coding|NM_059625|K07G5.3 ## {Repeats: no}
cremaneichromosome:chrUn:103837693:103837803:-1intergenic
celeganschromosome:chrX:2368753:2368874:1intergenic ## {MIR: cel-mir-73}
cbrennerichromosome:chrUn:1030285:1030352:-1intergenic
cjaponicachromosome:chrUn:6831545:6831663:1intergenic


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