miR-Intess: cbr-mir-74

cbr-mir-74

Cloning frequencies
absolute	AF16
cbr-mir-74 3arm	338
normalized	AF16
cbr-mir-74 3arm	0.881

block4394 (miRBase cbr-mir-74) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-74	0.001	no	no	0.43/0.50	18/23/0.89	0.0	0.0	299	0	1	0	7	6	3arm	1	nd	0.14	1	338	1	na	na

Clusters
Located in cluster 9: cbr-mir-74, sblock69_novel, cbr-mir-73

Families
Member of family miR-73/74 (seed GGCAAGA): cel-mir-73, cbr-mir-74, cbr-mir-73, sblock19_novel, sblock69_novel

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------GGCAAGA-----------------------------------------	338	miR-73/74
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAG----------------------------	21	299
	-------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCT------------------------------	19	34
	-------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTA-----------------------------	20	2
	-------------------------------------------------------------------------------TGGCAAGAAATGGCAGTC-------------------------------	18	2
	-------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAGAT--------------------------	23	1
cbr-miR-74	-------------------------------------------------------------------------------TGGCAAGAAATGGCAGTCTAGA---------------------------	22	-
cbriggsae	-------------------------CGCACTTTTGGGCTTCCATATCTTTCCCAGCTCCTC-TCATTTACTATGGATGCTGGCAAGAAATGGCAGTCTAGATGTGCA---------------------
cremanei	-TGACCGAAGACGCTGGAAAAGGTCGACACGTTTGGACTTCCGTCTCTTTCCCAGCTGATA-----TTGGATAGCATGCTGGCAAGAAATGGCAGTCCAGATGTGTACACCTTCAAGCTCTTGTCA--
celegans	CAAAGCAAAATGGTTCAAAAA-------ACGTTCGGGCTTCCATCTCTTTCCCAGCCTACA-----TCTCAACCTGGGCTGGCAAGAAATGGCAGTCTACACGTTT-----TTCAACCAAATGCTATG
cbrenneri	------------------GCCCCGTCACACAAATGGGCTTCCTTTTCGTTCCCAGCTGAA------TTTCTAATCATGCTGGCAAGACAAGGCAGTCTACTTGTGTGACGGGGC--------------
cjaponica	-GAAGCGGTGAAGTGAATGGCGACACGCGCGATTGGGCTTCCATATCTTTCCCAGCTGAAACATCTTTTAAC-----GCTGGCAAGAAATGGCAGTCTACTCGCGCATGCCTGCTCCCGCTCTC----
ppacificus	--------------------------------ATGAAGAGCATTTCCTTTCTCAGGTCATTGATCTTCTAGCCTTGGCTTGGCAAGAAATG---GTCTCTTCAT------------------------
	* * * * * * * ******** * * ***
	----- ------------------------------------ --------------------------------------------- -----	NM_001087279
	----- ------------------------------------ --------------------------------------------- -----	NM_072843
	+++++ ++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_001109816
	----- ------------------------------------ --------------------------------------------- -----	NM_065440
	+++++ ++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_020367
cbriggsae	.((((.((((((((.((((.((((..((((((((.. ...........))).))))).)))).)))).)))))))).)))).	1.000 -36.22
cremanei	.(((..((((.(((....(((((..(((((((((((((.((((.((((..(((((((.(( (...))).)).))))).)))).)))).)))))))))))))..)))))..)))))))))).	1.000 -50.40
celegans	...((((...(((((..(((( ((((..(((((.((((.((((..((((((((.. ........)))))))).)))).)))).)))))..)))))) )).)))))..))))...	1.000 -42.40
cbrenneri	((((((((((((((.((((((.((((.((....((((((((. .......))).)))))...)).)))).)))))).))))))))))))))	1.000 -52.10
cjaponica	..(((((.((.((....((((....((((((.((((((.((((.((((..((((((((((....))))).. ))))).)))).)))).)))))).)))))).)))).)))))))))...	0.981 -48.80
ppacificus	((((((((((((((.....((((((((...............))))))))...)))))) ..))))))))	0.640 -19.76

cbriggsae	chromosome:chrX:4493578:4493658:-1	Opposite_strand\|Intronic_non-coding\|NM_001087279\|fbxl5 ## Same_strand\|Intronic_coding\|NM_001109816\|MHC ## Same_strand\|Intronic_non-coding\|NM_020367\|PARP11 ## {Repeats: no} ## {MIR: cbr-mir-74}
cremanei	chromosome:chrUn:103837392:103837511:-1	intergenic
celegans	chromosome:chrX:2369030:2369140:1	intergenic ## {MIR: cel-mir-74}
cbrenneri	chromosome:chrUn:1030552:1030641:-1	intergenic
cjaponica	chromosome:chrUn:6831845:6831962:1	intergenic
ppacificus	chromosome:chrUn:17469670:17469790:-1	intergenic

miR-Intess™

cbr-mir-74

block4394 (miRBase cbr-mir-74) [miRNAknown_cloningHIGH_randfoldOK]