sblock19_novel
| absolute | AF16 |
| sblock19_novel 5arm | 2 |
| sblock19_novel 3arm | 26 |
| normalized | AF16 |
| sblock19_novel 5arm | 0.005 |
| sblock19_novel 3arm | 0.068 |
sblock19 [novel_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.57/0.63 | 19/23/0.96 | 0.0 0.0 | 0.0 0.0 | 2 22 | 0 0 | 1 1 | 0 0 | 16 18 | 4 6 | 5arm 3arm | 1 1 | nd nd | 0.19 0.19 | 2 2 | 28 | 1 | 1 | 2 |
| Member of family miR-788 (seed CCGCUUC): cbr-mir-788, sblock19_novel |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------GGCAAGA-------------------------------- | 26 | miR-73/74 |
| seed | -----------------CCGCUUC------------------------------------------------------------------------------ | 2 | miR-788 |
| len | cloning frequencies | ||
| AF16 | |||
| --------------------------------------------------------------TGGCAAGACAGGCA-GCGGTAG------------------ | 21 | 22 | |
| ----------------ACCGCTTCCTTCCTTGCGCAC----------------------------------------------------------------- | 21 | 2 | |
| --------------------------------------------------------------TGGCAAGACAGGCA-GCGGTA------------------- | 20 | 2 | |
| --------------------------------------------------------------TGGCAAGACAGGCA-GCGGTAGAT---------------- | 23 | 1 | |
| --------------------------------------------------------------TGGCAAGACAGGCA-GCGGT-------------------- | 19 | 1 | |
| cbriggsae | AGTCCCTCTCTTTGTCACCGCTTCCTTCCTTGCGCACACCTAATTCCAGTAGTAAAG-GATGTGGCAAGACAGGCA-GCGGTAGATAAGGGAGATTGAGACA | ||
| cremanei | --------CCAGTGAGCCGGAATCCTTCTGTGCAC---TCTGCATTCATTATACAAG---------AGGGCAAGAA-GCC--------TGGAATCTGG---- | ||
| celegans | ---------------CACTTTTTCCTTCGC--------CTTTCCCCAAAAGTTCAAGCAAACTTGAAGGGCAAGACTGCG--------GAAAAACTG----- | ||
| ppacificus | ---------GATCTACCCTCTTCCCTTCT---------TGTGATGTCATCGCAAAAGTGTGGCGACATGGCAAGAA-GGG--------AAGAGGATGC---- | ||
| * ***** * * *** * * ** * * * ** | |||
| -------------------------------------------------------------- ------------------ ------------------------------ | NM_075282 | ||
| -------------------------------------------------------------- ------------------ ------------------------------ | NM_182230 | ||
| -------------------------------------------------------------- ------------------ ------------------------------ | NM_001104235 | ||
| -------------------------------------------------------------- ------------------ ------------------------------ | NM_001104236 | ||
| -------------------------------------------------------------- ------------------ ------------------------------ | NM_206458 | ||
| cbriggsae | .(((.(((.(((((((((((((.(((..(((((.(((((((..............)) ).)))))))))..))).) ))))).)))))))))).....))). | 1.000 -40.94 | |
| cremanei | ((((....((((....(((((.(((.( (((..............)) )).))))))) ).) )))...)))) | 0.994 -20.94 | |
| celegans | ((.(((((((..... (((.(((...(((((......)))))...))).))).....) )))))).)) | 0.998 -15.00 | |
| ppacificus | .......((((((((((((( (((.(((((..((((....))))..))))).))))))) ))) )))))).... | 1.000 -43.70 |
| cbriggsae | chromosome:chrII:1875303:1875402:1 | Opposite_strand|Intronic_non-coding|NM_075282|wrs-1 ## Opposite_strand|Intronic_coding|NM_001104235|CG17816 ## {Repeats: no} |
| cremanei | chromosome:chrUn:117888273:117888412:1 | intergenic |
| celegans | chromosome:chrX:16024050:16024189:-1 | intergenic |
| ppacificus | chromosome:chrUn:108173577:108173716:-1 | intergenic |
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