miR-Intess: cbr-mir-788

cbr-mir-788

Cloning frequencies
absolute	AF16
cbr-mir-788 5arm	3
normalized	AF16
cbr-mir-788 5arm	0.008

block4650 (miRBase cbr-mir-788) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-788	0.001	no	no	0.46/0.50	21/26/0.75	0.0	1.7	3	0	1	0	9	4	5arm	1	nd	0.19	3	3	1	na	na

Families
Member of family miR-788 (seed CCGCUUC): cbr-mir-788, sblock19_novel

		reads	miRBase family seed
seed	------------------------------CCGCUUC----------------------------------------------------------------------------------	3	miR-788
		len	cloning frequencies
			AF16
	-----------------------------TCCGCTTCTCAATGCTCCAT--T-------------------------------------------------------------------	21	1
	-----------------------------TCCGCTTCTCAATGCTCCAT--TTG-----------------------------------------------------------------	23	1
	-----------------------------TCCGCTTCTCAATGCTCCAT--TTGC----------------------------------------------------------------	24	1
cbr-miR-788	-----------------------------TCCGCTTCTCAATGCTCCAT--TTGCAA--------------------------------------------------------------	26	-
cbriggsae	--------------------ACTAACTTTTCCGCTTCTCAATGCTCCAT--TTGCAAAATCAAATTGATTTTCTTGCAAATGGGATGAGAACC--GGAAACGTT--TGA----------
celegans	TTACAAATTTTCAGCTGGAAGCTCACTTTTCCGCTTCTAACT--TCCAT--TTGCAGAGTTCAAGTAAT----CTGGAAAT-GGATTAGAATCGTGGAAAAGTTAGTGAATAGC-----
cbrenneri	-----------------------------TCCGCTTCT------TCAATCCTTCCAGGAACAGAACAATCAAATTAGTGATATCATCTGCATT-TGGCGAC-----TGGAAAGTGTA--
ppacificus	---------------TGGGGGCTGACTCTCCCGCTTCGCCCTGCTATCTCGCCGGTCAGACAGCGCGAG-------------------AGAGCATGGCGAA-----CGGAGAGAGTCAG
	******* * * * * ** * *
	----- ----------------------------- ------------------------------------------ --------- --- -----	NM_004119
	----- ----------------------------- ------------------------------------------ --------- --- -----	NM_026450
	----- ----------------------------- ------------------------------------------ --------- --- -----	NM_001011629
	----- ----------------------------- ------------------------------------------ --------- --- -----	NM_001009837
	+++++ +++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++ +++++++++ +++ +++++	NM_064155
	+++++ +++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++ +++++++++ +++ +++++	NM_001030661
	+++++ +++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++ +++++++++ +++ +++++	NM_022731
	+++++ +++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++ +++++++++ +++ +++++	NM_001109087
cbriggsae	.(.(((.((((((.((((((...(.(((( ((((((((((.....))))...))))))))))).)))))).) ))))).))) .).	1.000 -31.60
celegans	.............((((...(((.((((((((((((((((.. ((((( ((.((((..........) ))).)))) )))))))))..)))))))))).)))...))))	0.998 -38.40
cbrenneri	..(((((.( (((.((...(((((..((((...((((......))))....))))..)) ))).)). )))))))))..	0.961 -15.40
ppacificus	......((((((((((((.((((((.((((.((((((..((...))...))))) ).)))).)))))) ))).)))))))))	1.000 -46.30

cbriggsae	chromosome:chrX:16579528:16579610:-1	Opposite_strand\|Intronic_coding\|NM_004119\|FLT3 ## Opposite_strand\|Intronic_non-coding\|NM_026450\|Zfp169 ## Same_strand\|Intronic_non-coding\|NM_064155\|Y17G7B.3 ## {Repeats: no} ## {MIR: cbr-mir-788}
celegans	chromosome:chrX:8485227:8485331:-1	intergenic ## {MIR: cel-mir-788}
cbrenneri	chromosome:chrUn:1087656:1087778:1	Opposite_strand\|Boundary_coding\|NM_078847 ## Opposite_strand\|Intronic_coding\|NM_153473 ## Opposite_strand\|Exonic_coding\|NM_076019
ppacificus	chromosome:chrUn:28988774:28988853:-1	intergenic

miR-Intess™

cbr-mir-788

block4650 (miRBase cbr-mir-788) [miRNAknown_randfoldOK]