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cbr-mir-357

cbr-mir-357

Cloning frequencies
absoluteAF16
cbr-mir-357 3arm4
normalizedAF16
cbr-mir-357 3arm0.010
cbr-mir-357 relative cloning frequencies

block1719 (miRBase cbr-mir-357-2) [miRNAknown_rep_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBase cbr-mir-357-20.001noDNA0.41/0.4520/22/1.000.0
0.0
3
0
1
0
24
11
3arm
2
nd
0.18
1
41nana
Families
Member of family miR-357 (seed AAAUGCC): cbr-mir-357, cbr-mir-357
block1719 hairpin
  readsmiRBase family seed
seed     ------------------------------------------------------------------------------------------AAUGCCA---------------------------------------------------------     3novel
seed     -----------------------------------------------------------------------------------------AAAUGCC----------------------------------------------------------     1miR-357
  lencloning frequencies
   AF16
      -----------------------------------------------------------------------------------------AAATGCCAGTCAT-TGACGGAAT------------------------------------------     223
      ----------------------------------------------------------------------------------------AAAATGCCAGTCAT-TGACGG---------------------------------------------     201
cbr-miR-357     ----------------------------------------------------------------------------------------AAAATGCCAGTCAT-TGACGGA--------------------------------------------     21-
cbriggsae     ----------------------CTACATCAGAAGAGACAGCGAATCCCGGCAATCACCGTGCATTTTCATCTACCAGAGGCACTAATGAAAATGCCAGTCAT-TGACGGAATTCG--------------TTGAATCTGGAATTAAAGCAT----      
cremanei     ------------------TCAACGATGTGCTGCCTAACAGCGGATTCCAGTAA-CTCTGAGCATATACATGAAGTTTCAAAAC-AATGTAAATGCCAGTCGT-TGCTGGAATTCG-------------------------ATAAGCACTCGTGA      
celegans     TAGTAGTACTTCTGATATTTAACGCTGTACTACTCACCAGCGGATCCCTACAA-CGCTGCGCATATGCATGAACACAATGAA--AATGTAAATGCCAGTCGT-TGCAGGAGTTCGCATACAGTAGTAAAATGCGCCCAAACGGAGAACTTTTG-      
cbrenneri     -------------------------------------------ATCCCTGTAA-TACTGTGCATATACATGTCATGTA---ACTAATGTAAATGCCAGTCGT-TGCAGGAAT------------------------------------------      
cjaponica     -------------------------------------------ATTC--GCGA-TGAAGCGCGTTTGCATTATTT------ACCGGTGCGAATGCCATTTTCATACAGAAA-------------------------------------------      
                                                 ** *     *     * ** * * ***           *    **  ******* *    *   * *                                                  
 +++++                      ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++              +++++++++++++++++++++    +++++NM_001087791
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001047975
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001858
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_213264
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_131292
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_080680
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001845
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_007739
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_181277
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001006951
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001081764
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001046199
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001005153
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001002980
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001014971
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_204790
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001082666
 +++++                      ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++              +++++++++++++++++++++    +++++NM_079524
 +++++                      ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++              +++++++++++++++++++++    +++++NM_206442
 +++++                      ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++              +++++++++++++++++++++    +++++NM_206443
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001038742
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_080338
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_167026
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_167027
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_212528
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_201478
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_182968
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_033150
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_080629
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_000089
 +++++                      ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++              +++++++++++++++++++++    +++++NM_005381
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001107100
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_000393
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_080681
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_004845
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_080680
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001844
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_080679
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001854
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_212579
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_080630
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_007736
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001083844
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_007738
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_031366
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_199214
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_009926
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_031362
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_031365
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_134452
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_000092
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_000091
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_078485
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001851
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001079992
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001130548
cbriggsae                           .....((...(((..((((((((.(((.((((.((.(.((((((((((...((...)).....))))))))))).)).)) )).))).)))))              )))..))).))..........         1.000 -33.80
cremanei                       ...((((.(((((.........((((((((((((( (.(((.((((.(((((...(((....))) .))))).)))))))..)) ))))))))))))                         ...)))))))))..     0.948 -44.20
celegans     ....(((.((.(((........(((..(((((((.....(((((..(((.((( (((((.((((.(((((............  .))))).))))))).))) )).)))..)))))....)))))))....)))......))))).)))....      0.930 -45.46
cbrenneri                                                ...((((((( (((((.((((.(((((........   ....))))).)))))))).)) ))))))...                                               0.999 -24.10
cjaponica                                                .(((  ...( (((((.(((((((((((....      ...)))))))))))...))))))...))).                                                1.000 -18.70

cbriggsaechromosome:chrIII:6833082:6833194:1Same_strand|Intronic_coding|NM_001087791|col2a1b ## Opposite_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_non-coding|NM_213264|col9a1 ## {Repeats: no} ## {MIR: cbr-mir-357-2}
cremaneichromosome:chrUn:25671347:25671454:-1Opposite_strand|Intronic_coding|NM_199607
celeganschromosome:chrV:8580501:8580649:-1Opposite_strand|Intronic_coding|F25G6.2 ## {Repeats: PALTTAA3_CE -402 200 1 class=DNA} ## {MIR: cel-mir-357}
cbrennerichromosome:chrUn:174196371:174196523:-1intergenic
cjaponicachromosome:chrUn:43827781:43827933:1Opposite_strand|Intronic_coding|NM_072216 ## {SimpF: trf}


block3640 (miRBase cbr-mir-357-1) [miRNAknown_rep_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBase cbr-mir-357-10.001noDNA0.41/0.4520/22/1.000.0
0.0
3
0
1
0
24
11
3arm
2
nd
0.18
1
41nana
Families
Member of family miR-357 (seed AAAUGCC): cbr-mir-357, cbr-mir-357
block3640 hairpin
  readsmiRBase family seed
seed     ------------------------------------------------------------------------------------------AAUGCCA---------------------------------------------------------     3novel
seed     -----------------------------------------------------------------------------------------AAAUGCC----------------------------------------------------------     1miR-357
  lencloning frequencies
   AF16
      -----------------------------------------------------------------------------------------AAATGCCAGTCAT-TGACGGAAT------------------------------------------     223
      ----------------------------------------------------------------------------------------AAAATGCCAGTCAT-TGACGG---------------------------------------------     201
cbr-miR-357     ----------------------------------------------------------------------------------------AAAATGCCAGTCAT-TGACGGA--------------------------------------------     21-
cbriggsae     ----------------------CTACATCAGAAGAGACAGCGAATCCCGGCAATCACCGTGCATTTTCATCTACCAGAGGCACTAATGAAAATGCCAGTCAT-TGACGGAATTCG--------------TTGAATCTGGAATTAAAGCAT----      
cremanei     ------------------TCAACGATGTGCTGCCTAACAGCGGATTCCAGTAA-CTCTGAGCATATACATGAAGTTTCAAAAC-AATGTAAATGCCAGTCGT-TGCTGGAATTCG-------------------------ATAAGCACTCGTGA      
celegans     TAGTAGTACTTCTGATATTTAACGCTGTACTACTCACCAGCGGATCCCTACAA-CGCTGCGCATATGCATGAACACAATGAA--AATGTAAATGCCAGTCGT-TGCAGGAGTTCGCATACAGTAGTAAAATGCGCCCAAACGGAGAACTTTTG-      
cbrenneri     -------------------------------------------ATCCCTGTAA-TACTGTGCATATACATGTCATGTA---ACTAATGTAAATGCCAGTCGT-TGCAGGAAT------------------------------------------      
cjaponica     -------------------------------------------ATTC--GCGA-TGAAGCGCGTTTGCATTATTT------ACCGGTGCGAATGCCATTTTCATACAGAAA-------------------------------------------      
                                                 ** *     *     * ** * * ***           *    **  ******* *    *   * *                                                  
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_001106714
 +++++                      ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++              +++++++++++++++++++++    +++++NM_001028857
 +++++                      ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++              +++++++++++++++++++++    +++++NM_001028858
 +++++                      ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++              +++++++++++++++++++++    +++++NM_001062304
 +++++                      ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++              +++++++++++++++++++++    +++++NM_029761
 .....                      ................................................................................ ............              .....................    ..<<<NM_072809
 -----                      -------------------------------------------------------------------------------- ------------              ---------------------    -----NM_072806
cbriggsae                           .....((...(((..((((((((.(((.((((.((.(.((((((((((...((...)).....))))))))))).)).)) )).))).)))))              )))..))).))..........         1.000 -33.80
cremanei                       ...((((.(((((.........((((((((((((( (.(((.((((.(((((...(((....))) .))))).)))))))..)) ))))))))))))                         ...)))))))))..     0.948 -44.20
celegans     ....(((.((.(((........(((..(((((((.....(((((..(((.((( (((((.((((.(((((............  .))))).))))))).))) )).)))..)))))....)))))))....)))......))))).)))....      0.930 -45.46
cbrenneri                                                ...((((((( (((((.((((.(((((........   ....))))).)))))))).)) ))))))...                                               0.999 -24.10
cjaponica                                                .(((  ...( (((((.(((((((((((....      ...)))))))))))...))))))...))).                                                1.000 -18.70

cbriggsaechromosome:chrV:1213904:1214016:-1Opposite_strand|Intronic_non-coding|NM_001106714|Slc7a15 ## Same_strand|Intronic_non-coding|NM_001028857|K04F1.14 ## Same_strand|Intronic_coding|NM_001028858|K04F1.14 ## {Repeats: no} ## {MIR: cbr-mir-357-1}
cremaneichromosome:chrUn:25671347:25671454:-1Opposite_strand|Intronic_coding|NM_199607
celeganschromosome:chrV:8580501:8580649:-1Opposite_strand|Intronic_coding|F25G6.2 ## {Repeats: PALTTAA3_CE -402 200 1 class=DNA} ## {MIR: cel-mir-357}
cbrennerichromosome:chrUn:174196371:174196523:-1intergenic
cjaponicachromosome:chrUn:43827781:43827933:1Opposite_strand|Intronic_coding|NM_072216 ## {SimpF: trf}


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